Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002152 (nuoC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002152 showshow history
Names
nuoC ECDH10B_2448
Product
NADH:ubiquinone oxidoreductase, chain C,D
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2491842 2493644 1803 601
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001268 (IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit) Jul 2009
Automated Process Approved IPR010219 (IPR010219 (DEPRECATED) NADH dehydrogenase I, subunit D) Jul 2009
Automated Process Approved IPR010218 (IPR010218 NADH dehydrogenase, subunit C) Jul 2009
Automated Process Approved IPR001135 (IPR001135 NADH-quinone oxidoreductase, subunit D) Jul 2009
Automated Process Approved IPR014029 (IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nuoC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007549
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2448 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product NADH:ubiquinone oxidoreductase, chain C,D Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010219 (DEPRECATED) NADH dehydrogenase I, subunit D Protein Sequence Similarity - InterPro Domain: IPR010219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010218 NADH dehydrogenase, subunit C Protein Sequence Similarity - InterPro Domain: IPR010218
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Protein Sequence Similarity - InterPro Domain: IPR014029
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001135 NADH-quinone oxidoreductase, subunit D Protein Sequence Similarity - InterPro Domain: IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Protein Sequence Similarity - InterPro Domain: IPR001268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007549 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007549
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000442 nuoC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000461 nuoC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017323 nuoC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001258 nuoC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003249 nuoC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005250 nuoC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002343 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008936 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002231 nuoC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006955 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006712 nuoC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006651 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078964 nuoC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006563 nuoC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005902 nuoC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002573 nuoC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007013 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000653 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006763 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005288 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006730 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006315 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008265 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005667 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006051 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006983 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007333 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006864 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006211 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007505 nuoC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027259 nuoC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005121 nuoC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007108 nuoC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007549 nuoC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002360 nuoC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002584 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002439 nuoC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133181 nuoC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000102 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002573 nuoC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063311 nuoC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001731 nuoC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000766 nuoC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000268 nuoC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006634 nuoC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000601 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002720 nuoC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006936 nuoC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007448 nuoC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007080 nuoC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006203 nuoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006927 nuoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006229 nuoC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006661 nuoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004312 nuoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006068 nuoC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006872 nuoC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007388 nuoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000539 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000538 nuoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000658 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007117 nuoC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005065 nuoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006631 nuoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006606 nuoC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110297 nuoC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082250 nuoC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097422 nuoC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006956 nuoC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004461 nuoC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008722 nuoC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002565 nuoC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008071 nuoC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005954 nuoC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002854 nuoC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073639 nuoC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088623 nuoC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002522 nuoC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002564 nuoC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002150 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004034 nuoD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000626 nuoD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003767 nuoC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002526 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239978 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005928 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002468 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007929 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000914 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123834 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004702 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005600 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006920 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005493 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031321 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008207 nuoCD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002586 nuoC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002353 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005772 nuoCD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005422 nuoCD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002673 nuoC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003197 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001837 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2486842 to 2498644
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002148nuoHCDScomplement24862522487229Downstream
AEC-0002149nuoGCDScomplement24872262489958Downstream
AEC-0002150nuoFCDScomplement24900052491342Downstream
AEC-0002151nuoECDScomplement24913392491839Downstream
AEC-0002152nuoCCDScomplement24918422493644Matches
AEC-0002153nuoBCDScomplement24937382494400Upstream
AEC-0002154nuoACDScomplement24944162494859Upstream
AEC-0002155lrhACDScomplement24954902496428Upstream
AEC-0002156yfbQCDSforward24973482498565Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948