Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002153 (nuoB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002153 showshow history
Names
nuoB ECDH10B_2449
Product
NADH:ubiquinone oxidoreductase, chain B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2493738 2494400 663 221
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006138 (IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit) Jul 2009
Automated Process Approved IPR006137 (IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit) Jul 2009
Automated Process Approved IPR014406 (IPR014406 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nuoB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007551
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2449 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product NADH:ubiquinone oxidoreductase, chain B Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Protein Sequence Similarity - InterPro Domain: IPR006137
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014406 (DEPRECATED) [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB Protein Sequence Similarity - InterPro Domain: IPR014406
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Protein Sequence Similarity - InterPro Domain: IPR006138
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007551 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007551
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014406
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000405 nuoB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000480 nuoB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017322 nuoB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001257 nuoB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003248 nuoB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005251 nuoB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002344 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008935 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002232 nuoB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006954 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006713 nuoB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006650 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078965 nuoB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006564 nuoB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005903 nuoB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002574 nuoB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007014 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000654 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006764 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005289 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006731 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006316 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008266 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005666 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006052 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006984 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007334 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006863 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006212 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007506 nuoB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027260 nuoB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005122 nuoB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007109 nuoB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007551 nuoB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002361 nuoB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002585 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002440 nuoB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133182 nuoB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000101 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002574 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063312 nuoB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001741 nuoB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000767 nuoB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000269 nuoB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006635 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000600 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002721 nuoB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006937 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007452 nuoB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007084 nuoB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006202 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006928 nuoB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006230 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006662 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004313 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006069 nuoB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006873 nuoB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007387 nuoB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000538 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000537 nuoB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000657 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007118 nuoB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005064 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006632 nuoB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006607 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110301 nuoB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082249 nuoB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097426 nuoB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006955 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004460 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008723 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002566 nuoB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008072 nuoB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005955 nuoB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002855 nuoB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073640 nuoB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088624 nuoB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002523 nuoB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002565 nuoB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002149 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004030 nuoB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000627 nuoB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003766 nuoB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002525 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239979 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005929 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002469 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007930 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000913 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123838 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004703 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005601 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001080 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006921 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005494 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031320 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008206 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002587 nuoB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002354 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005771 nuoB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005421 nuoB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002674 nuoB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003198 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001836 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2488738 to 2499400
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002149nuoGCDScomplement24872262489958Downstream
AEC-0002150nuoFCDScomplement24900052491342Downstream
AEC-0002151nuoECDScomplement24913392491839Downstream
AEC-0002152nuoCCDScomplement24918422493644Downstream
AEC-0002153nuoBCDScomplement24937382494400Matches
AEC-0002154nuoACDScomplement24944162494859Upstream
AEC-0002155lrhACDScomplement24954902496428Upstream
AEC-0002156yfbQCDSforward24973482498565Upstream
AEC-0002157yfbRCDSforward24986492499248Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948