Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002156 (yfbQ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002156 showshow history
Names
yfbQ ECDH10B_2452
Product
predicted aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2497348 2498565 1218 406
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001176 (IPR001176 (DEPRECATED) 1-aminocyclopropane-1-carboxylate synthase) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfbQ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007560
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2452 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted aminotransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001176 (DEPRECATED) 1-aminocyclopropane-1-carboxylate synthase Protein Sequence Similarity - InterPro Domain: IPR001176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007560 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007560
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000750 alaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000731 alaA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020595 alaA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001254 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003244 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005255 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002347 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008931 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002236 yfbQ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006951 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006717 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006646 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078968 alaA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006568 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005907 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002577 yfbQ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007017 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000658 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006767 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005292 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006735 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006320 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008269 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005662 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006055 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006987 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007338 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006859 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006217 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007509 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027263 yfbQ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005126 alaA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007112 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007560 alaA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002366 yfbQ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002588 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002444 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133185 yfbQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000097 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002579 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063320 yfbQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001743 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001941 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000273 yfbQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006640 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000596 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002726 yfbQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007466 yfbQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007097 yfbQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006197 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006933 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006235 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006667 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004318 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006074 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006878 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007382 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000534 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000533 yfbQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000651 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007123 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005059 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006636 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006612 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110313 yfbQ CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082245 yfbQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097444 yfbQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006949 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004455 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008727 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002569 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008075 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005959 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002858 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073643 yfbQ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088627 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002526 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002568 yfbQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002146 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004018 aat CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000630 aat_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003883 yfbQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002522 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239987 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005933 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002473 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007935 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000909 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123853 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004708 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005605 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006925 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005499 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031317 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008202 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002591 yfbQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002358 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005767 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005416 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002677 yfbQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003203 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001832 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2492348 to 2503565
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002152nuoCCDScomplement24918422493644Upstream
AEC-0002153nuoBCDScomplement24937382494400Upstream
AEC-0002154nuoACDScomplement24944162494859Upstream
AEC-0002155lrhACDScomplement24954902496428Upstream
AEC-0002156yfbQCDSforward24973482498565Matches
AEC-0002157yfbRCDSforward24986492499248Downstream
AEC-0002158yfbTCDScomplement25012262501876Downstream
AEC-0002159yfbUCDScomplement25018872502381Downstream
AEC-0002160yfbVCDScomplement25024642502919Downstream
AEC-0002161ackACDSforward25032572504459Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948