Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002157 (yfbR) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002157 showshow history
Names
yfbR ECDH10B_2453
Product
deoxyribonucleoside 5'-monophosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2498649 2499248 600 200
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003607 (IPR003607 HD/PDEase domain) Jul 2009
Automated Process Approved IPR006674 (IPR006674 HD domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003607
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfbR Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007563
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2453 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product deoxyribonucleoside 5'-monophosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006674 HD domain Protein Sequence Similarity - InterPro Domain: IPR006674
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003607 HD/PDEase domain Protein Sequence Similarity - InterPro Domain: IPR003607
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007563 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007563
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003607
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001191 yfbR CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000892 yfbR CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020594 yfbR CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001253 yfbR CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003243 yfbR CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005256 yfbR CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002348 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008930 yfbR CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002238 yfbR CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006950 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006718 yfbR CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006645 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078969 yfbR CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006569 yfbR CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005908 yfbR CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002578 yfbR CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007018 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000659 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006768 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005293 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006736 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006321 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008270 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005661 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006056 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006988 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007339 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006858 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006218 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007510 yfbR CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027264 yfbR CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005127 yfbR CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007113 yfbR CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007563 yfbR CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002367 yfbR CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002589 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002445 yfbR CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133186 yfbR CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000096 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002580 yfbR CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063321 yfbR CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001744 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001942 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000274 yfbR CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006641 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000595 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002727 yfbR CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006944 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007468 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007099 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006196 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006934 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006236 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006668 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004319 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006075 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006879 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007381 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000533 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000532 yfbR CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000650 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007124 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005058 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006637 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006613 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110315 yfbR CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082244 yfbR CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097447 yfbR CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006948 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004454 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008728 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008076 yfbR CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005960 yfbR CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002859 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073644 yfbR CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088628 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002527 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002569 yfbR CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002145 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004016 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000631 yfbR CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003882 yfbR CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003114 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239988 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005934 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002474 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007936 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000908 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123855 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004709 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005606 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004004 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006926 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005500 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031316 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008201 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002592 yfbR CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002359 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005766 yfbR CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005415 yfbR CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002678 yfbR CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003204 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001831 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2493649 to 2504248
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002153nuoBCDScomplement24937382494400Upstream
AEC-0002154nuoACDScomplement24944162494859Upstream
AEC-0002155lrhACDScomplement24954902496428Upstream
AEC-0002156yfbQCDSforward24973482498565Upstream
AEC-0002157yfbRCDSforward24986492499248Matches
AEC-0002158yfbTCDScomplement25012262501876Downstream
AEC-0002159yfbUCDScomplement25018872502381Downstream
AEC-0002160yfbVCDScomplement25024642502919Downstream
AEC-0002161ackACDSforward25032572504459Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948