Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002174 (hisJ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002174 showshow history
Names
hisJ ECDH10B_2471
Product
histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2515793 2516575 783 261
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Jul 2009
Automated Process Approved IPR005768 (IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hisJ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007617
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2471 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter Protein Sequence Similarity - InterPro Domain: IPR005768
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007617 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007617
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001985 hisJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002162 hisJ CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014703 hisJ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001232 hisJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003219 hisJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005274 hisJ CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002366 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008911 hisJ CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002256 hisJ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006931 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009160 hisJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010091 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078988 hisJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006588 hisJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005928 hisJ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002596 hisJ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007037 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000678 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006790 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005312 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006755 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006340 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008289 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005642 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006075 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007007 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007357 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006839 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006237 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007529 hisJ CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027282 hisJ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005146 hisJ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007132 hisJ CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007617 hisJ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002385 hisJ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002659 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002464 hisJ CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133204 hisJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000077 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002600 hisJ CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063337 hisJ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001766 hisJ CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001949 hisJ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000290 hisJ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006664 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000572 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002752 hisJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006968 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007540 hisJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007167 hisJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006173 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006957 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006259 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006692 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004343 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006098 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006903 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007358 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000511 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000510 hisJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000624 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007147 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005035 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006660 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006637 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110379 hisJ CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082222 hisJ CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097508 hisJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006925 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004431 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007211 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002594 hisJ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008096 hisJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005463 hisJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002881 hisJ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073662 hisJ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088646 hisJ CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002545 hisJ CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002589 hisJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002414 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003943 hisJ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000652 hisJ_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003201 hisJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002905 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240045 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004458 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002492 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008313 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000622 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124603 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004259 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005477 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003758 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006310 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005520 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031295 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007356 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002612 hisJ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002378 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005746 hisJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005394 hisJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002698 hisJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003224 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001810 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2510793 to 2521575
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002167yfcGCDSforward25104082511055Downstream
AEC-0002168folXCDSforward25111122511474Downstream
AEC-0002169yfcHCDSforward25114952512388Downstream
AEC-0002170yfcICDScomplement25124362513326Downstream
AEC-0002171hisPCDScomplement25135232514296Downstream
AEC-0002172hisMCDScomplement25143042515020Downstream
AEC-0002173hisQCDScomplement25150172515703Downstream
AEC-0002174hisJCDScomplement25157932516575Matches
AEC-0002175argTCDScomplement25167962517578Upstream
AEC-0002176ubiXCDScomplement25178442518413Upstream
AEC-0002177purFCDScomplement25185082520025Upstream
AEC-0002178cvpACDScomplement25200622520550Upstream
AEC-0002179dedDCDScomplement25208092521471Upstream
AEC-0002180folCCDScomplement25214612522729Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948