Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002177 (purF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002177 showshow history
Names
purF ECDH10B_2474
Product
amidophosphoribosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2518508 2520025 1518 506
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002375 (IPR002375 (DEPRECATED) Purine/pyrimidine phosphoribosyl transferase, conserved site) Jul 2009
Automated Process Approved IPR005854 (IPR005854 Amidophosphoribosyltransferase) Jul 2009
Automated Process Approved IPR000583 (IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain) Jul 2009
Automated Process Approved IPR000836 (IPR000836 Phosphoribosyltransferase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009113 purine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005854
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004044 amidophosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005854
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002375
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name purF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007631
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2474 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product amidophosphoribosyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002375 (DEPRECATED) Purine/pyrimidine phosphoribosyl transferase, conserved site Protein Sequence Similarity - InterPro Domain: IPR002375
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005854 Amidophosphoribosyltransferase Protein Sequence Similarity - InterPro Domain: IPR005854
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain Protein Sequence Similarity - InterPro Domain: IPR000583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000836 Phosphoribosyltransferase domain Protein Sequence Similarity - InterPro Domain: IPR000836
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007631 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007631
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009113 purine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005854
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002375
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004044 amidophosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005854
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000662 purF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000568 purF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017778 purF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001230 purF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003216 purF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005277 purF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002369 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008907 purF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002259 purF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006927 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009163 purF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010088 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078993 purF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006591 purF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005931 purF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002599 purF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007040 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000681 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006793 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005315 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006758 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006343 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008292 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005639 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006078 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007010 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007360 purF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006836 purF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006240 purF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007532 purF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027285 purF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005149 purF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007136 purF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007631 purF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002388 purF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002662 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002467 purF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133207 purF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000074 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002603 purF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063339 purF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001769 purF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001951 purF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000292 purF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006673 purF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000564 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002761 purF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006977 purF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007569 purF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007193 purF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006164 purF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006966 purF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006268 purF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006701 purF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004352 purF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006107 purF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006912 purF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007349 purF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000503 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000502 purF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000615 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007156 purF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005026 purF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006669 purF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006646 purF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110407 purF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082214 purF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097532 purF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006916 purF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004422 purF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007220 purF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002597 purF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008099 purF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005460 purF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002884 purF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073665 purF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088649 purF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002551 purF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002592 purF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002416 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003936 purF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000654 purF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003199 purF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002907 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240050 purF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004460 purF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002497 purF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008315 purF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000620 purF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124596 purF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004257 purF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005475 purF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003762 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006308 purF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005522 purF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031293 purF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007354 purF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002615 purF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002381 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005742 purF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005392 purF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002700 purF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003228 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001807 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2513508 to 2525025
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002171hisPCDScomplement25135232514296Downstream
AEC-0002172hisMCDScomplement25143042515020Downstream
AEC-0002173hisQCDScomplement25150172515703Downstream
AEC-0002174hisJCDScomplement25157932516575Downstream
AEC-0002175argTCDScomplement25167962517578Downstream
AEC-0002176ubiXCDScomplement25178442518413Downstream
AEC-0002177purFCDScomplement25185082520025Matches
AEC-0002178cvpACDScomplement25200622520550Upstream
AEC-0002179dedDCDScomplement25208092521471Upstream
AEC-0002180folCCDScomplement25214612522729Upstream
AEC-0002181accDCDScomplement25227992523713Upstream
AEC-0002182dedACDScomplement25238692524528Upstream
AEC-0002183truACDScomplement25246112525423Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948