Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002206 (fadJ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002206 showshow history
Names
fadJ ECDH10B_2504
Product
fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2546802 2548946 2145 715
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006180 (IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Jul 2009
Automated Process Approved IPR001753 (IPR001753 Enoyl-CoA hydratase/isomerase) Jul 2009
Automated Process Approved IPR006176 (IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding) Jul 2009
Automated Process Approved IPR006108 (IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal) Jul 2009
Automated Process Approved IPR012802 (IPR012802 Fatty oxidation complex, alpha subunit FadJ) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006635 fatty acid beta-oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006180
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0004300 enoyl-CoA hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008692 3-hydroxybutyryl-CoA epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006180
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadJ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007723
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_2504 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006180
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR001753 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - InterPro Domain: IPR001753
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding Protein Sequence Similarity - InterPro Domain: IPR006176
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR012802 Fatty oxidation complex, alpha subunit FadJ Protein Sequence Similarity - InterPro Domain: IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006108
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007723 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007723
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006180
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0006635 fatty acid beta-oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006180
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0004300 enoyl-CoA hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008692 3-hydroxybutyryl-CoA epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012802
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001208 fadJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001357 fadJ CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015399 fadJ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001202 fadJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003184 fadJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005357 fadJ CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002397 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008878 fadJ CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002286 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006890 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008223 fadJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005609 FadJ CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079023 fadJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008225 fadJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005962 fadJ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002627 fadJ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007071 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000711 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006826 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005347 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006791 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006374 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008324 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005607 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006110 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007043 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007392 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006806 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006272 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007563 fadJ CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027314 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008973 fadJ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007165 fadJ CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007723 fadJ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002417 fadJ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002691 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002499 fadJ CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133235 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000045 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002632 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063365 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004060 fadJ CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004085 fadJ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000321 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006697 fadJ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000537 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002790 yfcX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007005 fadJ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007656 yfcX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007273 yfcX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006138 fadJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006992 fadJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006294 fadJ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006725 fadJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004376 fadJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006131 fadJ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006939 fadJ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007322 fadJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000477 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000476 yfcX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000585 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007183 fadJ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004999 fadJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006694 fadJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006671 fadJ CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110466 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082188 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097615 fadJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006890 fadJ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004397 fadJ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007246 fadJ CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002628 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008130 fadJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005368 fadJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002916 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073701 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088678 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002579 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002619 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001758 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003813 faoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000693 fadJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001040 fadJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001107 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240113 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004487 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002523 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008343 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000595 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124509 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004229 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005448 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001603 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006279 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005549 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031268 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007327 fadJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002641 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002407 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005714 fadJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005366 fadJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002724 fadJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003256 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001779 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2541802 to 2553946
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002201yfcSCDScomplement25413712542123Downstream
AEC-0002202yfcTCDScomplement25421432543039Downstream
AEC-0002203yfcUCDScomplement25430522544788Downstream
AEC-0002204yfcVCDScomplement25448702545433Downstream
AEC-0002205sixACDScomplement25461142546599Downstream
AEC-0002206fadJCDScomplement25468022548946Matches
AEC-0002207yfcYCDScomplement25489462550256Overlaps Upstream
AEC-0002208yfcZCDScomplement25504372550721Upstream
AEC-0002209fadLCDSforward25510872552433Upstream
AEC-0002210yfdFCDSforward25527992553857Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948