Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002207 (yfcY) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002207 showshow history
Names
yfcY ECDH10B_2505
Product
beta-ketoacyl-CoA thiolase, anaerobic, subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2548946 2550256 1311 437
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002155 (IPR002155 Thiolase) Jul 2009
Automated Process Approved IPR016039 (IPR016039 Thiolase-like) Jul 2009
Automated Process Approved IPR016038 (IPR016038 (DEPRECATED) Thiolase-like, subgroup) Jul 2009
Automated Process Approved IPR012806 (IPR012806 Acetyl-CoA C-acyltransferase FadI) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0016042 lipid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfcY Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007725
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2505 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product beta-ketoacyl-CoA thiolase, anaerobic, subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002155 Thiolase Protein Sequence Similarity - InterPro Domain: IPR002155
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016039 Thiolase-like Protein Sequence Similarity - InterPro Domain: IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016038 (DEPRECATED) Thiolase-like, subgroup Protein Sequence Similarity - InterPro Domain: IPR016038
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012806 Acetyl-CoA C-acyltransferase FadI Protein Sequence Similarity - InterPro Domain: IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007725 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007725
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0016042 lipid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001102 fadI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001656 fadI CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015398 fadI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001201 fadI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003183 fadI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005358 fadI CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002398 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008877 fadI CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002287 yfcY CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006889 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008224 fadI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005608 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079024 fadI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008226 fadI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005963 fadI CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002628 fadI CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007072 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000712 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006827 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005348 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006792 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006375 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008325 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005606 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006111 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007044 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007393 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006805 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006273 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007564 fadI CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027315 fadI CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008974 fadI CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007166 fadI CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007725 fadI CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002418 yfcY CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002692 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002500 fadI CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133236 fadI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000044 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002633 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063366 fadI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001761 fadI CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004086 fadI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000322 fadI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006698 fadI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000536 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002791 fadI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007006 fadI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007662 yfcY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007278 yfcY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006137 fadI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006993 fadI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006295 fadI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006726 fadI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004377 fadI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006132 fadI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006940 fadI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007321 fadI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000476 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000475 fadI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000584 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007184 fadI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004998 fadI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006695 fadI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006672 fadI CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110470 fadI CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082187 fadI CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097617 fadI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006889 fadI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004396 fadI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007247 fadI CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002629 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008131 fadI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005367 fadI CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002917 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073702 fadI CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088679 fadI CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002580 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002620 fadI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001759 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003807 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000694 fadI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001041 fadI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001106 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240114 fadI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004488 fadI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002524 fadI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008344 fadI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000594 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124504 fadI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004228 fadI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005447 fadI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001602 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006278 fadI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005550 fadI CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031267 fadI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007326 fadI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002642 fadI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002408 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005713 fadI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005365 fadI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002725 fadI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003257 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001778 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2543946 to 2555256
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002203yfcUCDScomplement25430522544788Downstream
AEC-0002204yfcVCDScomplement25448702545433Downstream
AEC-0002205sixACDScomplement25461142546599Downstream
AEC-0002206fadJCDScomplement25468022548946Overlaps Downstream
AEC-0002207yfcYCDScomplement25489462550256Matches
AEC-0002208yfcZCDScomplement25504372550721Upstream
AEC-0002209fadLCDSforward25510872552433Upstream
AEC-0002210yfdFCDSforward25527992553857Upstream
AEC-0002211vacJCDScomplement25540392554794Upstream
AEC-0002212yfdCCDSforward25550882556020Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948