Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002211 (vacJ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002211 showshow history
Names
vacJ ECDH10B_2509
Product
predicted lipoprotein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2554039 2554794 756 252
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007428 (IPR007428 MlaA lipoprotein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007428
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name vacJ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007745
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2509 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted lipoprotein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007428 MlaA lipoprotein Protein Sequence Similarity - InterPro Domain: IPR007428
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007745 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007745
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007428
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000700 vacJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000588 mlaA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015389 mlaA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001198 vacJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003180 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005363 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002401 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008872 vacJ CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002291 vacJ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006883 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008228 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005604 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079027 vacJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008230 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005967 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002631 vacJ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007076 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000716 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006832 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005353 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006797 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006380 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008330 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005601 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006116 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007049 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007398 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006800 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006278 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007569 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027320 vacJ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008977 mlaA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007170 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007745 mlaA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002422 vacJ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002696 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002504 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133240 vacJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000040 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002637 vacJ CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063370 vacJ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001776 vacJ CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001962 vacJ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000329 vacJ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006701 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000533 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002794 vacJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007009 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007673 vacJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007289 vacJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006134 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006997 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006298 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006730 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004380 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006135 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006943 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007317 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000473 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000472 vacJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000579 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007187 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004995 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006698 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006675 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110480 vacJ CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082184 vacJ CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097636 vacJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006886 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004393 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007250 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002641 vacJ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008138 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005361 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002926 vacJ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073706 vacJ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088683 vacJ CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002584 vacJ CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002627 vacJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001762 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003799 vacJ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000697 mlaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001044 vacJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001101 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240117 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004491 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002528 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008347 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000591 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124499 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004225 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005444 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002339 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006275 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005553 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031264 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007323 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002646 vacJ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002412 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005710 vacJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005362 vacJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002728 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003261 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001773 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2549039 to 2559794
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002207yfcYCDScomplement25489462550256Downstream
AEC-0002208yfcZCDScomplement25504372550721Downstream
AEC-0002209fadLCDSforward25510872552433Downstream
AEC-0002210yfdFCDSforward25527992553857Downstream
AEC-0002211vacJCDScomplement25540392554794Matches
AEC-0002212yfdCCDSforward25550882556020Upstream
AEC-0004146argWtRNAforward25560962556170Upstream
AEC-0004559CPS-53 (KpLE1)prophageforward25561722566386Upstream
AEC-0002213intSCDSforward25563322557489Upstream
AEC-0002214yfdGCDSforward25576422558004Upstream
AEC-0002215yfdHCDSforward25580012558921Upstream
AEC-0002216yfdICDSforward25589182560249Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948