Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002212 (yfdC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002212 showshow history
Names
yfdC ECDH10B_2510
Product
predicted inner membrane protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2555088 2556020 933 311
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000292 (IPR000292 Formate/nitrite transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfdC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007751
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2510 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted inner membrane protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000292 Formate/nitrite transporter Protein Sequence Similarity - InterPro Domain: IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007751 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007751
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002440 yfdC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002458 yfdC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005365 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002402 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008870 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002292 yfdC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006882 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008230 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005602 YfdC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079029 yfdC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008232 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005969 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002632 yfdC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007078 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000717 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006834 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005355 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006799 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006382 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008332 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005600 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006118 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007051 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007400 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006799 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006280 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007570 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027321 yfdC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008979 yfdC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007172 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007751 yfdC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002423 yfdC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002698 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002506 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133241 yfdC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000038 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002639 yfdC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063371 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001963 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006702 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000532 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002795 yfdC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007010 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007677 yfdC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007293 yfdC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006133 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006998 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006299 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006731 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004381 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006136 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006944 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007316 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000472 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000471 yfdC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000578 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007188 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004994 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006699 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006676 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110483 yfdC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082183 yfdC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097640 yfdC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006885 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004392 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007251 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002642 yfdC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008139 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005360 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002927 yfdC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073707 yfdC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088684 yfdC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002585 yfdC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002628 yfdC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001772 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003764 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000707 yfdC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001091 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2550088 to 2561020
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002207yfcYCDScomplement25489462550256Upstream
AEC-0002208yfcZCDScomplement25504372550721Upstream
AEC-0002209fadLCDSforward25510872552433Upstream
AEC-0002210yfdFCDSforward25527992553857Upstream
AEC-0002211vacJCDScomplement25540392554794Upstream
AEC-0002212yfdCCDSforward25550882556020Matches
AEC-0004146argWtRNAforward25560962556170Downstream
AEC-0004559CPS-53 (KpLE1)prophageforward25561722566386Downstream
AEC-0002213intSCDSforward25563322557489Downstream
AEC-0002214yfdGCDSforward25576422558004Downstream
AEC-0002215yfdHCDSforward25580012558921Downstream
AEC-0002216yfdICDSforward25589182560249Downstream
AEC-0002217tfaSpseudogeneforward25605902560892Downstream
AEC-0002218yfdKCDScomplement25608642561304Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948