Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002230 (dsdA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002230 showshow history
Names
dsdA ECDH10B_2531
Product
D-serine ammonia-lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2568989 2570317 1329 443
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000634 (IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site) Jul 2009
Automated Process Approved IPR001926 (IPR001926 Pyridoxal-phosphate dependent enzyme) Jul 2009
Automated Process Approved IPR011780 (IPR011780 D-serine ammonia-lyase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000634
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0046416 D-amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011780
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008721 D-serine ammonia-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011780
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000634
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dsdA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007804
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2531 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-serine ammonia-lyase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site Protein Sequence Similarity - InterPro Domain: IPR000634
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001926 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR001926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011780 D-serine ammonia-lyase Protein Sequence Similarity - InterPro Domain: IPR011780
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007804 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007804
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000634
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0046416 D-amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011780
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000634
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008721 D-serine ammonia-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011780
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002452 dsdA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002530 dsdA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016354 dsdA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003165 dsdA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005373 dsdA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008866 dsdA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002341 dsdA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006878 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008237 dsdA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005544 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079039 dsdA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008239 dsdA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005976 dsdA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007086 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005466 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006939 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005461 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006901 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006487 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008437 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005498 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006225 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009317 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010346 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009109 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008427 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007587 dsdA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027339 dsdA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007176 dsdA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007804 dsdA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002444 dsdA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002705 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002515 dsdA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133257 dsdA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003558 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008194 dsdA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004033 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004354 dsdA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008435 dsdA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011905 dsdA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011104 dsdA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005062 dsdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008490 dsdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005840 dsdA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005960 dsdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007666 dsdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007584 dsdA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008437 dsdA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006414 dsdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003691 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003652 dsdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004749 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008610 dsdA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004377 dsdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008079 dsdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004888 dsdA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113385 dsdA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085441 dsdA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101751 dsdA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005404 dsdA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004828 dsdA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006604 dsdA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002646 dsdA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008144 dsdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005347 dsdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002939 dsdA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073716 dsdA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088693 dsdA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002597 dsdA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002691 dsdA CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002471 dsdA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000064 dsdA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000546 dsdA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2563989 to 2575317
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004559CPS-53 (KpLE1)prophageforward25561722566386Upstream
AEC-0002224yfdQCDSforward25638192564643Upstream
AEC-0002225yfdRCDSforward25647712565307Upstream
AEC-0002226yfdSCDSforward25652982565660Upstream
AEC-0002227yfdTCDSforward25656602565965Upstream
AEC-0004086ypdJCDSforward25658812566021Upstream
AEC-0004045torICDSforward25660972566297Upstream
AEC-0002228dsdCCDScomplement25664812567416Upstream
AEC-0002229dsdXCDSforward25676342568971Upstream
AEC-0002230dsdACDSforward25689892570317Matches
AEC-0002231emrYCDScomplement25704252571963Downstream
AEC-0002232emrKCDScomplement25719632573126Downstream
AEC-0002233evgACDSforward25735422574156Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948