Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002237 (frc) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002237 showshow history
Names
frc ECDH10B_2539
Product
formyl-CoA transferase, NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2581791 2583041 1251 417
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003673 (IPR003673 CoA-transferase family III) Jul 2009
Automated Process Approved IPR017659 (IPR017659 Formyl-CoA:oxalate CoA-transferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0033608 formyl-CoA transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017659
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frc Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007828
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2539 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product formyl-CoA transferase, NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003673 CoA-transferase family III Protein Sequence Similarity - InterPro Domain: IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017659 Formyl-CoA:oxalate CoA-transferase Protein Sequence Similarity - InterPro Domain: IPR017659
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007828 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007828
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0033608 formyl-CoA transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017659
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003812 frc CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003845 frc CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016186 frc CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005381 frc CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002417 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008858 frc CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002349 yfdW CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006868 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008245 frc CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005536 frc pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079048 frc CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008247 frc CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005984 frc CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002718 frc CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007096 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005476 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006948 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005470 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006910 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006495 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008446 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005490 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006233 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009326 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010355 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009118 frc CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008435 frc CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007595 frc CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027348 frc CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008994 frc CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007184 frc CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007828 frc CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002452 frc CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002713 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002523 frc CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133266 frc CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003568 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002714 yfdW CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002654 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008152 frc CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005337 frc CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002953 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073724 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088701 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002605 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002699 frc CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2576791 to 2588041
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002234yfdECDScomplement25778102578955Downstream
AEC-0002235yfdVCDScomplement25790292579973Downstream
AEC-0002236oxcCDScomplement25800432581737Downstream
AEC-0002237frcCDScomplement25817912583041Matches
AEC-0002238yfdXCDScomplement25835542584189Upstream
AEC-0002239ypdICDSforward25844852584760Upstream
AEC-0002240yfdYCDScomplement25848372585079Upstream
AEC-0002241lpxPCDSforward25854322586352Upstream
AEC-0002242yfdZCDScomplement25868442588082Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948