Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002242 (yfdZ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002242 showshow history
Names
yfdZ ECDH10B_2544
Product
prediected aminotransferase, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2586844 2588082 1239 413
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfdZ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007850
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2544 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product prediected aminotransferase, PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007850 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007850
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001740 alaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001988 alaC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018221 alaC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001170 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003160 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009579 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002423 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008852 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002353 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006860 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008251 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005530 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079054 alaC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008253 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005990 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002723 yfdZ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007102 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005483 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006953 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005475 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006915 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006500 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008451 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005485 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006238 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009331 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010360 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009123 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008440 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007600 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027353 yfdZ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008999 alaC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007189 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007850 alaC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002457 yfdZ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002718 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002530 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133271 yfdZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003575 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002719 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063403 yfdZ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001792 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000800 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000360 yfdZ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006713 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000514 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002808 yfdZ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007026 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007729 yfdZ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007341 yfdZ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006121 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007021 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006322 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006742 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004392 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006146 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006955 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007304 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000458 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000458 yfdZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000565 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007200 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004981 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006710 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006686 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110521 yfdZ CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082167 yfdZ CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097664 yfdZ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006873 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004379 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007263 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002659 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008157 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005331 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002958 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073729 yfdZ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088705 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002609 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002704 yfdZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001800 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003670 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000747 dapL CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001097 yfdZ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002500 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240553 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006841 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002611 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006220 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000534 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125256 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007681 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007142 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008633 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005621 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031192 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007046 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001698 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002496 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005640 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005299 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002787 yfdZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003341 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001694 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2581844 to 2593082
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002237frcCDScomplement25817912583041Downstream
AEC-0002238yfdXCDScomplement25835542584189Downstream
AEC-0002239ypdICDSforward25844852584760Downstream
AEC-0002240yfdYCDScomplement25848372585079Downstream
AEC-0002241lpxPCDSforward25854322586352Downstream
AEC-0002242yfdZCDScomplement25868442588082Matches
AEC-0002243ypdACDSforward25884582590155Upstream
AEC-0002244ypdBCDSforward25901702590904Upstream
AEC-0002245ypdCCDSforward25909172591774Upstream
AEC-0002246ypdDCDScomplement25917772594272Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948