Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002260 (gltX) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002260 showshow history
Names
gltX ECDH10B_2564
Product
glutamyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2609044 2610459 1416 472
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000924 (IPR000924 Glutamyl/glutaminyl-tRNA synthetase) Jul 2009
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Jul 2009
Automated Process Approved IPR008925 (IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding) Jul 2009
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Jul 2009
Automated Process Approved IPR004527 (IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006424 glutamyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004818 glutamate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gltX Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007911
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2564 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glutamyl-tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000924 Glutamyl/glutaminyl-tRNA synthetase Protein Sequence Similarity - InterPro Domain: IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR008925
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial Protein Sequence Similarity - InterPro Domain: IPR004527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007911 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007911
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006424 glutamyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004818 glutamate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000881 gltX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000603 gltX CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019859 gltX CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001156 gltX CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003131 gltX CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002442 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008832 gltX CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002370 gltX CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006836 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079076 gltX CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006010 gltX CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002742 gltX CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007123 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005502 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006974 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005496 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010948 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008472 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005464 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006259 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010382 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007621 gltX CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027374 gltX CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009019 gltX CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007210 gltX CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007911 gltX CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002477 gltX CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002737 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002551 gltX CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133293 gltX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003595 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002739 gltX CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063582 gltX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001882 gltX CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002033 gltX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004291 gltX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006726 gltX CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000492 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002825 gltX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007040 gltX CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007768 gltX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007379 gltX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006106 gltX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007035 gltX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006337 gltX CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008742 gltX CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006160 gltX CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006969 gltX CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007291 gltX CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000446 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000446 gltX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000549 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007215 gltX CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004967 gltX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006725 gltX CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110550 gltX CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082154 gltX CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097699 gltX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006860 gltX CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004364 gltX CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007279 gltX CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002681 gltX CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008188 gltX CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002984 gltX CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073751 gltX CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088720 gltX CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002627 gltX CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002726 gltX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002924 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003628 gltX CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001431 gltX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001110 gltX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002819 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240591 gltX CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006854 gltX CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002624 gltX CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006233 gltX CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000525 gltX CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125301 gltX CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007668 gltX CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007128 gltX CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009860 gltX CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005635 gltX CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031179 gltX CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007032 gltX CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001684 gltX CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002511 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005627 gltX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005286 gltX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002800 gltX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003355 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001680 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2604044 to 2615459
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000039IS186B.3repeat_regionforward26040632605401Downstream
AEC-0002256insL-3CDSforward26041182605230Downstream
AEC-0002257yfeACDScomplement26054302607619Downstream
AEC-0004147alaXtRNAcomplement26078282607903Downstream
AEC-0004148alaWtRNAcomplement26079432608018Downstream
AEC-0002258yfeCCDSforward26082542608598Downstream
AEC-0002259yfeDCDSforward26086002608992Downstream
AEC-0002260gltXCDScomplement26090442610459Matches
AEC-0004149valUtRNAforward26107182610793Upstream
AEC-0004150valXtRNAforward26108382610913Upstream
AEC-0004151valYtRNAforward26109602611035Upstream
AEC-0004152lysVtRNAforward26110402611115Upstream
AEC-0002261xapRCDScomplement26113802612264Upstream
AEC-0002262xapBCDScomplement26125162613772Upstream
AEC-0002263xapACDScomplement26138322614665Upstream
AEC-0002264yfeNCDSforward26149142615678Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948