Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002262 (xapB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002262 showshow history
Names
xapB ECDH10B_2570
Product
xanthosine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2612516 2613772 1257 419
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR004740 (IPR004740 Nucleoside:H+ symporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015858 nucleoside transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004740
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004740
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005337 nucleoside transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004740
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name xapB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007925
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2570 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product xanthosine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004740 Nucleoside:H+ symporter Protein Sequence Similarity - InterPro Domain: IPR004740
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007925 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007925
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015858 nucleoside transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004740
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004740
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005337 nucleoside transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004740
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000386 xapB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001902 xapB CDS
Ortholog
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0003125 nupG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002449 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008821 nupG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002372 xapB CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079083 xapB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002748 xapB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009955 xapB CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0007925 xapB CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0002483 xapB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002744 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002559 xapB CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002746 xapB CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0006733 nupG CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002831 xapB CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0007047 nupG CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0007780 xapB CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0007388 xapB CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0006099 nupG CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0007042 nupG CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0006924 nupG CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0007139 nupG CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0006391 nupG CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0006166 nupG CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0006976 nupG CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0008161 nupG CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0000541 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0007222 nupG CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0004960 nupG CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0006732 nupG CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0008091 nupG CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0110561 xapB CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0082148 xapB CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097711 xapB CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0006853 nupG CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0004355 nupG CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0006021 nupG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000441 xapB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002673 xapB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001255 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006813 xapB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001270 xapB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001513 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003458 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2607516 to 2618772
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002257yfeACDScomplement26054302607619Downstream
AEC-0004147alaXtRNAcomplement26078282607903Downstream
AEC-0004148alaWtRNAcomplement26079432608018Downstream
AEC-0002258yfeCCDSforward26082542608598Downstream
AEC-0002259yfeDCDSforward26086002608992Downstream
AEC-0002260gltXCDScomplement26090442610459Downstream
AEC-0004149valUtRNAforward26107182610793Downstream
AEC-0004150valXtRNAforward26108382610913Downstream
AEC-0004151valYtRNAforward26109602611035Downstream
AEC-0004152lysVtRNAforward26110402611115Downstream
AEC-0002261xapRCDScomplement26113802612264Downstream
AEC-0002262xapBCDScomplement26125162613772Matches
AEC-0002263xapACDScomplement26138322614665Upstream
AEC-0002264yfeNCDSforward26149142615678Upstream
AEC-0002265yfeRCDScomplement26157172616643Upstream
AEC-0002266yfeHCDSforward26167332617731Upstream
AEC-0004087ypeBCDScomplement26177282617946Upstream
AEC-0002267ligACDScomplement26179482619963Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948