Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002263 (xapA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002263 showshow history
Names
xapA ECDH10B_2571
Product
purine nucleoside phosphorylase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2613832 2614665 834 278
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Jul 2009
Automated Process Approved IPR011268 (IPR011268 Purine nucleoside phosphorylase) Jul 2009
Automated Process Approved IPR001369 (IPR001369 (DEPRECATED) PNP/MTAP phosphorylase) Jul 2009
Automated Process Approved IPR010943 (IPR010943 Xanthosine phosphorylase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006139 nucleobase-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004731 purine-nucleoside phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name xapA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007927
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2571 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product purine nucleoside phosphorylase II Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011268 Purine nucleoside phosphorylase Protein Sequence Similarity - InterPro Domain: IPR011268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001369 (DEPRECATED) PNP/MTAP phosphorylase Protein Sequence Similarity - InterPro Domain: IPR001369
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010943 Xanthosine phosphorylase Protein Sequence Similarity - InterPro Domain: IPR010943
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007927 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007927
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006139 nucleobase-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004731 purine-nucleoside phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003452 xapA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003453 xapA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003124 xapA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002450 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008820 xapA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002373 xapA CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010400 xapA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079084 xapA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002749 xapA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009954 xapA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007927 xapA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002484 xapA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002745 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002560 xapA CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002747 xapA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006734 xapA CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002832 xapA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007048 xapA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007785 xapA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007391 xapA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006098 xapA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007043 xapA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006925 xapA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007138 xapA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006392 xapA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006167 xapA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006977 xapA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008160 xapA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000540 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007223 xapA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004959 xapA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006733 xapA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008092 xapA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110563 xapA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082147 xapA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097714 xapA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006852 xapA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004354 xapA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006022 xapA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000442 xapA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002672 xapA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001256 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236545 xapA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001310 xapA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005237 xapA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002197 xapA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119115 xapA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008077 xapA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004770 xapA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001937 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005348 xapA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003404 xapA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003037 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006312 xapA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006814 xapA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001269 xapA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001512 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003460 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2608832 to 2619665
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002259yfeDCDSforward26086002608992Downstream
AEC-0002260gltXCDScomplement26090442610459Downstream
AEC-0004149valUtRNAforward26107182610793Downstream
AEC-0004150valXtRNAforward26108382610913Downstream
AEC-0004151valYtRNAforward26109602611035Downstream
AEC-0004152lysVtRNAforward26110402611115Downstream
AEC-0002261xapRCDScomplement26113802612264Downstream
AEC-0002262xapBCDScomplement26125162613772Downstream
AEC-0002263xapACDScomplement26138322614665Matches
AEC-0002264yfeNCDSforward26149142615678Upstream
AEC-0002265yfeRCDScomplement26157172616643Upstream
AEC-0002266yfeHCDSforward26167332617731Upstream
AEC-0004087ypeBCDScomplement26177282617946Upstream
AEC-0002267ligACDScomplement26179482619963Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948