Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002267 (ligA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002267 showshow history
Names
ligA ECDH10B_2576
Product
DNA ligase, NAD(+)-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2617948 2619963 2016 672
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013840 (IPR013840 NAD-dependent DNA ligase, N-terminal) Jul 2009
Automated Process Approved IPR003583 (IPR003583 Helix-hairpin-helix DNA-binding motif, class 1) Jul 2009
Automated Process Approved IPR001357 (IPR001357 BRCT domain) Jul 2009
Automated Process Approved IPR001679 (IPR001679 NAD-dependent DNA ligase) Jul 2009
Automated Process Approved IPR013839 (IPR013839 NAD-dependent DNA ligase, adenylation) Jul 2009
Automated Process Approved IPR004150 (IPR004150 NAD-dependent DNA ligase, OB-fold) Jul 2009
Automated Process Approved IPR004149 (IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type) Jul 2009
Automated Process Approved IPR000445 (IPR000445 Helix-hairpin-helix motif) Jul 2009
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Jul 2009
Automated Process Approved IPR010994 (IPR010994 RuvA domain 2-like) Jul 2009
Automated Process Approved IPR016027 (IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006281 DNA repair GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001357
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ligA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007938
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2576 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product DNA ligase, NAD(+)-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000445 Helix-hairpin-helix motif Protein Sequence Similarity - InterPro Domain: IPR000445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004150 NAD-dependent DNA ligase, OB-fold Protein Sequence Similarity - InterPro Domain: IPR004150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type Protein Sequence Similarity - InterPro Domain: IPR004149
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like Protein Sequence Similarity - InterPro Domain: IPR016027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013839 NAD-dependent DNA ligase, adenylation Protein Sequence Similarity - InterPro Domain: IPR013839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010994 RuvA domain 2-like Protein Sequence Similarity - InterPro Domain: IPR010994
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Protein Sequence Similarity - InterPro Domain: IPR003583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001679 NAD-dependent DNA ligase Protein Sequence Similarity - InterPro Domain: IPR001679
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013840 NAD-dependent DNA ligase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001357 BRCT domain Protein Sequence Similarity - InterPro Domain: IPR001357
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007938 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007938
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006281 DNA repair GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001357
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001163 ligA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000647 ligA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014835 ligA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001148 lig CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003118 ligA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002455 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008815 ligA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002376 ligA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006826 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010395 ligA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079089 ligA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010831 ligA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002754 ligA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007132 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006984 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005506 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004979 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008482 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007930 ligA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027385 ligA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009948 ligA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007219 ligA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007938 ligA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002489 ligA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002750 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002565 ligA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133302 ligA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003601 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002751 lig CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063897 ligA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004180 ligA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003653 ligA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004021 ligA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006739 ligA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000480 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002837 ligA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007053 ligA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007799 lig CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007405 lig CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006093 ligA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007048 ligA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006930 ligA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007133 ligA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006397 ligA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006172 ligA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006982 ligA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008155 ligA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000438 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000438 ligA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000535 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007228 ligA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004954 ligA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006738 ligA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008097 ligA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110574 ligA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082142 ligA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097727 ligA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006847 ligA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004349 ligA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006027 ligA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002690 ligA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002992 ligA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073758 ligA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088727 ligA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002635 lig CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002735 ligA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002929 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003614 dnaL CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001436 ligA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001114 ligA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002814 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240597 ligA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006859 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002631 ligA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006240 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000520 ligA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125312 ligA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007661 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007122 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003454 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009853 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005642 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031170 ligA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007025 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001676 ligA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002518 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005621 ligA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005280 ligA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002806 ligA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003362 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001673 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2612948 to 2624963
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002262xapBCDScomplement26125162613772Downstream
AEC-0002263xapACDScomplement26138322614665Downstream
AEC-0002264yfeNCDSforward26149142615678Downstream
AEC-0002265yfeRCDScomplement26157172616643Downstream
AEC-0002266yfeHCDSforward26167332617731Downstream
AEC-0004087ypeBCDScomplement26177282617946Downstream
AEC-0002267ligACDScomplement26179482619963Matches
AEC-0002268zipACDScomplement26200342621020Upstream
AEC-0002269cysZCDSforward26212502622011Upstream
AEC-0002270cysKCDSforward26221962623167Upstream
AEC-0002271ptsHCDSforward26235512623808Upstream
AEC-0002272ptsICDSforward26238532625580Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948