Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002274 (pdxK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002274 showshow history
Names
pdxK ECDH10B_2583
Product
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2626173 2627024 852 284
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004625 (IPR004625 Pyridoxine kinase) Jul 2009
Automated Process Approved IPR013749 (IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004625
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008478 pyridoxal kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004625
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pdxK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007973
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2583 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004625 Pyridoxine kinase Protein Sequence Similarity - InterPro Domain: IPR004625
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Protein Sequence Similarity - InterPro Domain: IPR013749
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007973 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007973
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004625
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008478 pyridoxal kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004625
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002862 pdxK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002942 pdxK CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003109 pdxK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006839 pdxK CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002462 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008806 pdxK CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002383 pdxK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006818 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006729 pdxK CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079097 pdxK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009922 pdxK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008482 pdxK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002761 pdxK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007139 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000762 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006992 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005513 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004987 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006679 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008489 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006328 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006281 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008140 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007938 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010768 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006537 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008064 pdxK CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027392 pdxK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008019 pdxK CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007226 pdxK CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007973 pdxK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002496 pdxK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002757 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002573 pdxK CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133309 pdxK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003609 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002760 pdxK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006748 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000466 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002847 pdxK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007062 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007832 pdxK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007438 pdxK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006084 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007057 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006939 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007124 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006406 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006181 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006991 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008146 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000431 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000430 pdxK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000525 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007237 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004945 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006747 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008925 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110602 pdxK CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082134 pdxK CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097757 pdxK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006838 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004340 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006036 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008200 pdxK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004348 pdxK CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002999 pdxK CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073765 pdxK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088734 pdxK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002642 pdxK CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002744 pdxK CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2621173 to 2632024
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002269cysZCDSforward26212502622011Downstream
AEC-0002270cysKCDSforward26221962623167Downstream
AEC-0002271ptsHCDSforward26235512623808Downstream
AEC-0002272ptsICDSforward26238532625580Downstream
AEC-0002273crrCDSforward26256212626130Downstream
AEC-0002274pdxKCDScomplement26261732627024Matches
AEC-0002275yfeKCDSforward26271292627503Upstream
AEC-0002276yfeSCDSforward26275362628270Upstream
AEC-0002277cysMCDScomplement26284592629370Upstream
AEC-0002278cysACDScomplement26295042630601Upstream
AEC-0002279cysWCDScomplement26305912631466Upstream
AEC-0002280cysUCDScomplement26314662632299Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948