Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002279 (cysW) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002279 showshow history
Names
cysW ECDH10B_2588
Product
sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2630591 2631466 876 292
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005667 (IPR005667 Sulphate ABC transporter permease protein 2) Jul 2009
Automated Process Approved IPR011866 (IPR011866 Sulphate ABC transporter, permease protein CysW) Jul 2009
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015563 (DEPRECATED) uptake transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015116 sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cysW Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007988
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2588 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011866 Sulphate ABC transporter, permease protein CysW Protein Sequence Similarity - InterPro Domain: IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005667 Sulphate ABC transporter permease protein 2 Protein Sequence Similarity - InterPro Domain: IPR005667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007988 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007988
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015563 (DEPRECATED) uptake transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015116 sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000554 cysW CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000584 cysW CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019862 cysW CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001137 cysW CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003102 cysW CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006833 cysW CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002466 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008801 cysW CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002387 cysW CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006813 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006733 cysW CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009473 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079101 cysW CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009918 cysW CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008486 cysW CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002765 cysW CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007143 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000766 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006996 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005517 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004991 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006675 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008493 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006324 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006285 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008144 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007942 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010772 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006541 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008068 cysW CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027396 cysW CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008023 cysW_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007232 cysW CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007988 cysW CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002501 cysW CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002761 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002577 cysW CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133313 cysW CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003613 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002764 cysW CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061120 cysW CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003855 cysW CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003556 cysW CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001338 cysW CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006755 cysW CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000461 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002855 cysW CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007069 cysW CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007854 cysW CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007460 cysW CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006078 cysW CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007064 cysW CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006946 cysW CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007117 cysW CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006412 cysW CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006187 cysW CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006998 cysW CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008139 cysW CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000425 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000424 cysW CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000518 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007243 cysW CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004938 cysW CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006754 cysW CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007470 cysW CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110619 cysW CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082128 cysW CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097778 cysW CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006830 cysW CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004333 cysW CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006043 cysW CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002704 cysW CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008204 cysW CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004352 cysW CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003003 cysW CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073772 cysW CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002648 cysW CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002748 cysW CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003574 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003561 cysW CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001449 cysW CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003158 cysW CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002794 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240655 cysW CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006882 cysW CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002658 cysW CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006264 cysW CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000498 cysW CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125404 cysW CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007638 cysW CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007100 cysW CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001096 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004973 cysW CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005666 cysW CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031145 cysW CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008753 cysW CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001650 cysW CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002544 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005598 cysW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005260 cysW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002828 cysW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003388 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001647 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2625591 to 2636466
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002273crrCDSforward26256212626130Downstream
AEC-0002274pdxKCDScomplement26261732627024Downstream
AEC-0002275yfeKCDSforward26271292627503Downstream
AEC-0002276yfeSCDSforward26275362628270Downstream
AEC-0002277cysMCDScomplement26284592629370Downstream
AEC-0002278cysACDScomplement26295042630601Overlaps Downstream
AEC-0002279cysWCDScomplement26305912631466Matches
AEC-0002280cysUCDScomplement26314662632299Overlaps Upstream
AEC-0002281cysPCDScomplement26322992633315Upstream
AEC-0002282ucpACDScomplement26336192634410Upstream
AEC-0002283yfeTCDScomplement26345392635396Upstream
AEC-0002284yfeUCDSforward26355602636456Upstream
AEC-0002285murPCDSforward26364602637884Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948