Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002281 (cysP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002281 showshow history
Names
cysP ECDH10B_2590
Product
thiosulfate transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2632299 2633315 1017 339
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002052 (IPR002052 DNA methylase, N-6 adenine-specific, conserved site) Jul 2009
Automated Process Approved IPR000957 (IPR000957 Sulphate/thiosulphate-binding, conserved site) Jul 2009
Automated Process Approved IPR005669 (IPR005669 Thiosulphate/Sulfate-binding protein) Jul 2009
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0032259 methylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008271 secondary active sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cysP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007992
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2590 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product thiosulfate transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000957 Sulphate/thiosulphate-binding, conserved site Protein Sequence Similarity - InterPro Domain: IPR000957
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002052 DNA methylase, N-6 adenine-specific, conserved site Protein Sequence Similarity - InterPro Domain: IPR002052
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005669 Thiosulphate/Sulfate-binding protein Protein Sequence Similarity - InterPro Domain: IPR005669
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007992 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007992
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0032259 methylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008271 secondary active sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001677 cysP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001715 cysP CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001135 cysP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003100 cysP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006831 cysP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002468 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008799 cysP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002389 cysP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006809 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006735 cysP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009475 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079103 cysP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009916 cysP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008488 cysP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002767 cysP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007145 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000768 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006998 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005519 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004993 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006673 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008495 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006322 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006287 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008146 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007944 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006626 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006543 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008070 cysP CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027398 cysP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008025 cysP CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007234 cysP CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007992 cysP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002503 cysP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002763 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002579 cysP CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133315 cysP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003615 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002766 cysP CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061118 cysP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000473 cysP CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001423 cysP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001336 cysP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006757 cysP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000459 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002857 cysP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007071 cysP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007863 cysP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007469 cysP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006076 cysP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007066 cysP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006948 cysP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007115 cysP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006414 cysP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006189 cysP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007000 cysP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008137 cysP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000423 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000422 cysP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000516 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007245 cysP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004936 cysP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006756 cysP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007468 cysP CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110626 cysP CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082126 cysP CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097784 cysP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006828 cysP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004331 cysP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006045 cysP CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002706 cysP CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008206 cysP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004354 cysP CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003005 cysP CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073774 cysP CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088738 cysP CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002650 cysP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002750 cysP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003576 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003554 cysP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001451 cysP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003160 cysP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002792 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240670 cysP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006884 cysP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002661 cysP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006266 cysP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000496 cysP CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125423 cysP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007636 cysP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007098 cysP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001094 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004975 cysP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005668 cysP CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031143 cysP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008751 cysP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001646 cysP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002547 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005596 cysP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005258 cysP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002830 cysP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003391 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001643 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2627299 to 2638315
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002275yfeKCDSforward26271292627503Downstream
AEC-0002276yfeSCDSforward26275362628270Downstream
AEC-0002277cysMCDScomplement26284592629370Downstream
AEC-0002278cysACDScomplement26295042630601Downstream
AEC-0002279cysWCDScomplement26305912631466Downstream
AEC-0002280cysUCDScomplement26314662632299Overlaps Downstream
AEC-0002281cysPCDScomplement26322992633315Matches
AEC-0002282ucpACDScomplement26336192634410Upstream
AEC-0002283yfeTCDScomplement26345392635396Upstream
AEC-0002284yfeUCDSforward26355602636456Upstream
AEC-0002285murPCDSforward26364602637884Upstream
AEC-0002286yfeWCDSforward26378892639193Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948