Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002284 (yfeU) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002284 showshow history
Names
yfeU ECDH10B_2593
Product
predicted PTS component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2635560 2636456 897 299
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005486 (IPR005486 Glucokinase regulatory protein, conserved site) Jul 2009
Automated Process Approved IPR005488 (IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ) Jul 2009
Automated Process Approved IPR001347 (IPR001347 Sugar isomerase (SIS)) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0046348 amino sugar catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005488
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016835 carbon-oxygen lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005488
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfeU Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008007
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2593 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted PTS component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005486 Glucokinase regulatory protein, conserved site Protein Sequence Similarity - InterPro Domain: IPR005486
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001347 Sugar isomerase (SIS) Protein Sequence Similarity - InterPro Domain: IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ Protein Sequence Similarity - InterPro Domain: IPR005488
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008007 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008007
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0046348 amino sugar catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005488
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016835 carbon-oxygen lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005488
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000506 murQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000423 murQ CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019665 murQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001048 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003098 murQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006828 murQ CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002470 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008796 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002391 yfeU CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006806 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006738 murQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009478 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079105 murQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008491 murQ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002771 murQ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007148 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000771 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007001 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005522 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004996 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006670 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008498 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006319 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006290 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008149 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007947 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006629 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006546 murQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008073 murQ CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027401 yfeU CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008027 murQ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007237 murQ CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008007 murQ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002506 yfeU CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002766 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002582 murQ CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133318 yfeU CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003618 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002768 yfeU CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063551 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001826 murQ CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002018 murQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003314 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000454 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002709 yfeU CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008209 murQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004357 murQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003008 yfeU CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073778 yfeU CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088741 yfeU CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002653 yfeU CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002753 yfeU CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001190 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010589 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001959 murQ_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002060 murQ_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000302 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240410 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007741 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002846 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006423 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000754 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125121 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004386 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008608 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003694 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008581 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004801 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030976 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007097 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001467 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002719 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005448 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005099 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002979 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003580 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001456 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2630560 to 2641456
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002278cysACDScomplement26295042630601Upstream
AEC-0002279cysWCDScomplement26305912631466Upstream
AEC-0002280cysUCDScomplement26314662632299Upstream
AEC-0002281cysPCDScomplement26322992633315Upstream
AEC-0002282ucpACDScomplement26336192634410Upstream
AEC-0002283yfeTCDScomplement26345392635396Upstream
AEC-0002284yfeUCDSforward26355602636456Matches
AEC-0002285murPCDSforward26364602637884Downstream
AEC-0002286yfeWCDSforward26378892639193Downstream
AEC-0002287yfeXCDScomplement26394332640332Downstream
AEC-0002288yfeYCDScomplement26404282641003Downstream
AEC-0002289yfeZCDScomplement26410642641513Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948