Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002321 (tktB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002321 showshow history
Names
tktB ECDH10B_2630
Product
transketolase 2, thiamin-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2669423 2671426 2004 668
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005474 (IPR005474 Transketolase, N-terminal) Jul 2009
Automated Process Approved IPR005475 (IPR005475 Transketolase-like, pyrimidine-binding domain) Jul 2009
Automated Process Approved IPR005478 (IPR005478 Transketolase, bacterial-like) Jul 2009
Automated Process Approved IPR005476 (IPR005476 (DEPRECATED) Transketolase, C-terminal) Jul 2009
Automated Process Approved IPR015941 (IPR015941 (DEPRECATED) Transketolase-like, C-terminal) Jul 2009
Automated Process Approved IPR009014 (IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005476
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005476
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004802 transketolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005478
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tktB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008117
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2630 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product transketolase 2, thiamin-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005478 Transketolase, bacterial-like Protein Sequence Similarity - InterPro Domain: IPR005478
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005476 (DEPRECATED) Transketolase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005476
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015941 (DEPRECATED) Transketolase-like, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015941
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Protein Sequence Similarity - InterPro Domain: IPR009014
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005475 Transketolase-like, pyrimidine-binding domain Protein Sequence Similarity - InterPro Domain: IPR005475
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005474 Transketolase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005474
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008117 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008117
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005476
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004802 transketolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005478
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005476
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000022 tktB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000020 tktB CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008117 tktB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2664423 to 2676426
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002316eutQCDScomplement26640892664790Upstream
AEC-0002317eutPCDScomplement26647652665244Upstream
AEC-0002318ypfECDScomplement26652572665592Upstream
AEC-0002319maeBCDScomplement26658852668164Upstream
AEC-0002320talACDSforward26684532669403Upstream
AEC-0002321tktBCDSforward26694232671426Matches
AEC-0002322ypfGCDScomplement26715212672564Downstream
AEC-0002323yffHCDScomplement26726902673265Downstream
AEC-0002324aegACDScomplement26733332675312Downstream
AEC-0002325narQCDSforward26755182677218Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948