Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002328 (dapE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002328 showshow history
Names
dapE ECDH10B_2637
Product
N-succinyl-diaminopimelate deacylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2681394 2682521 1128 376
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001261 (IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site) Jul 2009
Automated Process Approved IPR005941 (IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria) Jul 2009
Automated Process Approved IPR002933 (IPR002933 Peptidase M20) Jul 2009
Automated Process Approved IPR011650 (IPR011650 Peptidase M20, dimerisation domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001261
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005941
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001261
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009014 succinyl-diaminopimelate desuccinylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005941
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dapE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008142
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2637 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product N-succinyl-diaminopimelate deacylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Protein Sequence Similarity - InterPro Domain: IPR001261
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria Protein Sequence Similarity - InterPro Domain: IPR005941
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002933 Peptidase M20 Protein Sequence Similarity - InterPro Domain: IPR002933
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011650 Peptidase M20, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR011650
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008142 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008142
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005941
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001261
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009014 succinyl-diaminopimelate desuccinylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005941
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001261
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000174 dapE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000170 dapE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018350 dapE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001117 dapE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003076 dapE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006793 dapE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002505 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008758 dapE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002426 dapE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006754 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006774 dapE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007925 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079143 dapE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006768 dapE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008527 dapE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002868 dapE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007185 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000810 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007036 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005557 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005031 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006635 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008533 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006284 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006325 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008184 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007982 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006664 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006581 dapE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008109 dapE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027436 dapE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008061 dapE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007275 dapE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008142 dapE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002541 dapE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002801 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002617 dapE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133353 dapE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003657 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002806 dapE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061537 dapE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000729 dapE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001546 dapE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001151 dapE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006795 dapE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000413 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002910 dapE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007110 dapE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007982 dapE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007578 dapE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006038 dapE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007104 dapE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006988 dapE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007079 dapE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006453 dapE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006228 dapE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007038 dapE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008098 dapE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000387 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000386 dapE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000472 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007284 dapE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004898 dapE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006792 dapE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007432 dapE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110728 dapE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082088 dapE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097897 dapE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006791 dapE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004293 dapE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006085 dapE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002745 dapE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008251 dapE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004395 dapE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003045 dapE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073814 dapE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088771 dapE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002691 dapE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002788 dapE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000811 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003425 dapE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001476 dapE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003181 dapE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002866 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240775 dapE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007260 dapE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002710 dapE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006307 dapE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000461 dapE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125557 dapE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007595 dapE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007060 dapE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002752 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005013 dapE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005709 dapE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031104 dapE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008712 dapE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001602 dapE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002591 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005557 dapE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005214 dapE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002870 dapE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003445 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001598 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2676394 to 2687521
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002325narQCDSforward26755182677218Upstream
AEC-0002326acrDCDSforward26773822680495Upstream
AEC-0002327yffBCDSforward26810342681390Upstream
AEC-0002328dapECDSforward26813942682521Matches
AEC-0004088ypfNCDSforward26825492682749Downstream
AEC-0002329ypfHCDScomplement26828592683557Downstream
AEC-0002330ypfICDScomplement26836312685646Downstream
AEC-0002331ypfJCDScomplement26856612686524Downstream
AEC-0002332purCCDScomplement26866922687405Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948