Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002334 (dapA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002334 showshow history
Names
dapA ECDH10B_2644
Product
dihydrodipicolinate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2688669 2689547 879 293
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002220 (IPR002220 DapA-like) Jul 2009
Automated Process Approved IPR005263 (IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019877 diaminopimelate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005263
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005263
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dapA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008163
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2644 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dihydrodipicolinate synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002220 DapA-like Protein Sequence Similarity - InterPro Domain: IPR002220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA Protein Sequence Similarity - InterPro Domain: IPR005263
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008163 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008163
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0019877 diaminopimelate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005263
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005263
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000155 dapA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000174 dapA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018362 dapA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001111 dapA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003069 dapA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006786 dapA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002512 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008750 dapA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002432 dapA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006747 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006783 dapA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007917 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079150 dapA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006759 dapA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008536 dapA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002875 dapA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007194 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000818 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007043 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005564 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005038 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006628 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008540 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006277 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006332 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008191 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007989 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006671 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006588 dapA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008116 dapA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027444 dapA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008068 dapA_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007283 dapA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008163 dapA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002548 dapA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002810 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002624 dapA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133359 dapA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003665 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002813 dapA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061508 dapA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000685 dapA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000315 dapA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001133 dapA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006801 dapA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000407 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002916 dapA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007116 dapA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008007 dapA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007600 dapA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006032 dapA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007110 dapA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006994 dapA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007073 dapA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006459 dapA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006234 dapA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007044 dapA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008092 dapA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000381 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000380 dapA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000466 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007290 dapA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004892 dapA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006799 dapA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007425 dapA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110747 dapA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082082 dapA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097917 dapA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006785 dapA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004287 dapA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006091 dapA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002752 dapA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008258 dapA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004402 dapA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003057 dapA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073822 dapA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088778 dapA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002698 dapA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002795 dapA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000801 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003403 dapA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001486 dapA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002511 dapA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002857 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240794 dapA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007251 dapA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002720 dapA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006316 dapA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000452 dapA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125583 dapA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007586 dapA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007051 dapA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003110 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005022 dapA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005718 dapA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031094 dapA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008703 dapA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001592 dapA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002601 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005548 dapA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005206 dapA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002878 dapA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003456 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001587 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2683669 to 2694547
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002330ypfICDScomplement26836312685646Downstream
AEC-0002331ypfJCDScomplement26856612686524Downstream
AEC-0002332purCCDScomplement26866922687405Downstream
AEC-0002333nlpBCDScomplement26876182688652Downstream
AEC-0002334dapACDScomplement26886692689547Matches
AEC-0002335gcvRCDSforward26896932690265Upstream
AEC-0002336bcpCDSforward26902652690735Upstream
AEC-0002337hyfACDSforward26909882691605Upstream
AEC-0002338hyfBCDSforward26916052693623Upstream
AEC-0002339hyfCCDSforward26936342694581Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948