Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002337 (hyfA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002337 showshow history
Names
hyfA ECDH10B_2647
Product
hydrogenase 4, 4Fe-4S subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2690988 2691605 618 206
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hyfA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008179
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2647 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product hydrogenase 4, 4Fe-4S subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008179 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008179
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003872 hyfA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001718 hyfA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015735 hyfA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006783 hyfA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008747 hyfA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006744 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006786 hyfA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007914 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006756 hyfA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008539 hyfA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007197 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000821 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007046 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005567 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005041 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006625 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008543 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006274 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006335 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008194 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007992 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006674 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006591 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008119 hyfA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027447 hyfA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007286 hyfA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008179 hyfA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002551 hyfA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002813 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002627 hyfA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133362 hyfA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003668 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008261 hyfA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004405 hyfA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003060 hyfA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073825 hyfA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088781 hyfA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002701 hyfA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002798 hyfA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001153 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003594 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2685988 to 2696605
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002331ypfJCDScomplement26856612686524Upstream
AEC-0002332purCCDScomplement26866922687405Upstream
AEC-0002333nlpBCDScomplement26876182688652Upstream
AEC-0002334dapACDScomplement26886692689547Upstream
AEC-0002335gcvRCDSforward26896932690265Upstream
AEC-0002336bcpCDSforward26902652690735Upstream
AEC-0002337hyfACDSforward26909882691605Matches
AEC-0002338hyfBCDSforward26916052693623Overlaps Downstream
AEC-0002339hyfCCDSforward26936342694581Downstream
AEC-0002340hyfDCDSforward26945982696037Downstream
AEC-0002341hyfECDSforward26960492696699Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948