Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002343 (hyfG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002343 showshow history
Names
hyfG ECDH10B_2653
Product
hydrogenase 4, subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2698274 2699941 1668 556
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014029 (IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site) Jul 2009
Automated Process Approved IPR001268 (IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit) Jul 2009
Automated Process Approved IPR001501 (IPR001501 Nickel-dependent hydrogenase, large subunit) Jul 2009
Automated Process Approved IPR001135 (IPR001135 NADH-quinone oxidoreductase, subunit D) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016151 nickel cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008901 ferredoxin hydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hyfG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008194
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2653 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product hydrogenase 4, subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Protein Sequence Similarity - InterPro Domain: IPR014029
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Protein Sequence Similarity - InterPro Domain: IPR001268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001501 Nickel-dependent hydrogenase, large subunit Protein Sequence Similarity - InterPro Domain: IPR001501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001135 NADH-quinone oxidoreductase, subunit D Protein Sequence Similarity - InterPro Domain: IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008194 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008194
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016151 nickel cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008901 ferredoxin hydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000242 hyfG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001564 hyfG CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008194 hyfG CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2693274 to 2704941
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002338hyfBCDSforward26916052693623Upstream
AEC-0002339hyfCCDSforward26936342694581Upstream
AEC-0002340hyfDCDSforward26945982696037Upstream
AEC-0002341hyfECDSforward26960492696699Upstream
AEC-0002342hyfFCDSforward26967042698284Overlaps Upstream
AEC-0002343hyfGCDSforward26982742699941Matches
AEC-0002344hyfHCDSforward26999512700496Downstream
AEC-0002345hyfICDSforward27004932701251Downstream
AEC-0002346hyfJCDSforward27012442701657Downstream
AEC-0002347hyfRCDSforward27016872703699Downstream
AEC-0002348focBCDSforward27037212704569Downstream
AEC-0002349yfgOCDScomplement27046072705668Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948