Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002348 (focB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002348 showshow history
Names
focB ECDH10B_2658
Product
predicted formate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2703721 2704569 849 283
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000292 (IPR000292 Formate/nitrite transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name focB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008206
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2658 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted formate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000292 Formate/nitrite transporter Protein Sequence Similarity - InterPro Domain: IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008206 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008206
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004631 focB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005491 focB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006771 fnt CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008736 fnt CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006730 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006744 fnt CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007208 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000832 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007057 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005578 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005052 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006614 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008554 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006263 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006346 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008205 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008003 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006685 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006602 fnt CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008130 fnt CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027458 focB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007297 fnt CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008206 focB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002562 focB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002825 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002638 fnt CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133373 focB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003679 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008272 fnt CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004416 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003071 focB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2698721 to 2709569
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002343hyfGCDSforward26982742699941Upstream
AEC-0002344hyfHCDSforward26999512700496Upstream
AEC-0002345hyfICDSforward27004932701251Upstream
AEC-0002346hyfJCDSforward27012442701657Upstream
AEC-0002347hyfRCDSforward27016872703699Upstream
AEC-0002348focBCDSforward27037212704569Matches
AEC-0002349yfgOCDScomplement27046072705668Downstream
AEC-0002350yfgCCDSforward27058812707344Downstream
AEC-0002351yfgDCDSforward27073652707724Downstream
AEC-0002352hdaCDScomplement27078622708563Downstream
AEC-0002353uraACDScomplement27086582709947Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948