Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002353 (uraA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002353 showshow history
Names
uraA ECDH10B_2663
Product
uracil transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2708658 2709947 1290 430
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006042 (IPR006042 Xanthine/uracil permease) Jul 2009
Automated Process Approved IPR006043 (IPR006043 Xanthine/uracil/vitamin C permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name uraA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008219
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2663 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product uracil transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006042 Xanthine/uracil permease Protein Sequence Similarity - InterPro Domain: IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006043 Xanthine/uracil/vitamin C permease Protein Sequence Similarity - InterPro Domain: IPR006043
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008219 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008219
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002073 uraA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001788 uraA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018369 uraA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001104 uraA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003062 uraA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006766 uraA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002519 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008731 uraA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002439 uraA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006724 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006806 uraA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009748 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079158 uraA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006739 uraA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008558 uraA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002882 uraA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007214 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000837 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007062 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005583 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005057 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006609 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008559 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006258 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006351 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008210 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008008 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006690 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006607 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008135 uraA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027463 uraA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008075 uraA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007303 uraA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008219 uraA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002567 uraA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002831 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002643 uraA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133378 uraA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003684 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002821 uraA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061502 uraA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000687 uraA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000313 uraA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001127 uraA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006811 uraA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000397 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002926 uraA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007126 uraA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008036 uraA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007626 uraA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006021 uraA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007118 uraA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007002 uraA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007062 uraA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006469 uraA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006245 uraA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007054 uraA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008082 uraA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000371 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000370 uraA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000455 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007298 uraA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004882 uraA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006810 uraA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007414 uraA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110768 uraA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082072 uraA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097937 uraA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006775 uraA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004277 uraA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006099 uraA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002778 uraA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008279 uraA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004423 uraA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003076 uraA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073843 uraA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088796 uraA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002717 uraA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002816 uraA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000794 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003380 uraA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001493 uraA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002518 uraA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002850 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005195 uraA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002888 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003467 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001576 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2703658 to 2714947
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002347hyfRCDSforward27016872703699Downstream
AEC-0002348focBCDSforward27037212704569Downstream
AEC-0002349yfgOCDScomplement27046072705668Downstream
AEC-0002350yfgCCDSforward27058812707344Downstream
AEC-0002351yfgDCDSforward27073652707724Downstream
AEC-0002352hdaCDScomplement27078622708563Downstream
AEC-0002353uraACDScomplement27086582709947Matches
AEC-0002354uppCDScomplement27100332710659Upstream
AEC-0002355purMCDSforward27109842712021Upstream
AEC-0002356purNCDSforward27120212712659Upstream
AEC-0002357ppkCDSforward27128312714897Upstream
AEC-0002358ppxCDSforward27149022716443Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948