Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002356 (purN) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002356 showshow history
Names
purN ECDH10B_2666
Product
phosphoribosylglycinamide formyltransferase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2712021 2712659 639 213
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001555 (IPR001555 Phosphoribosylglycinamide formyltransferase, active site) Jul 2009
Automated Process Approved IPR004607 (IPR004607 Phosphoribosylglycinamide formyltransferase) Jul 2009
Automated Process Approved IPR002376 (IPR002376 Formyl transferase, N-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004607
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004644 phosphoribosylglycinamide formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004607
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name purN Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008232
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2666 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphoribosylglycinamide formyltransferase 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001555 Phosphoribosylglycinamide formyltransferase, active site Protein Sequence Similarity - InterPro Domain: IPR001555
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004607 Phosphoribosylglycinamide formyltransferase Protein Sequence Similarity - InterPro Domain: IPR004607
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002376 Formyl transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008232 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008232
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004607
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004644 phosphoribosylglycinamide formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004607
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000922 purN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000954 purN CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018374 purN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001100 purN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003058 purN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006762 purN CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002522 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008727 purN CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002442 purN CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006721 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006809 purN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009744 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079162 purN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006735 purN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008561 purN CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002885 purN CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007217 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000840 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007066 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005586 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005061 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006605 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008563 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006254 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006355 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008213 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008012 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006694 purN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006611 purN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008139 purN CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027466 purN CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008079 purN CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007306 purN CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008232 purN CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002570 purN CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002834 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002647 purN CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133381 purN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003687 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002824 purN CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061499 purN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000692 purN CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000311 purN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001124 purN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006815 purN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000394 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002929 purN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007130 purN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008046 purN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007635 purN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006018 purN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007122 purN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007006 purN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007058 purN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006472 purN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006248 purN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007058 purN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008078 purN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000368 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000367 purN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000450 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007302 purN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004879 purN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006814 purN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007410 purN CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110777 purN CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082069 purN CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097952 purN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006772 purN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004273 purN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006103 purN CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002781 purN CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008282 purN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004427 purN CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003079 purN CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073846 purN CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088799 purN CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002720 purN CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002819 purN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000791 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003372 purN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001496 purN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002521 purN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003692 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240817 purN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007238 purN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002735 purN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006328 purN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000668 purN CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124783 purN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004315 purN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006091 purN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002464 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006362 purN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005730 purN CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031081 purN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007193 purN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001576 purN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002615 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005537 purN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005192 purN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002891 purN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003470 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001573 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2707021 to 2717659
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002350yfgCCDSforward27058812707344Upstream
AEC-0002351yfgDCDSforward27073652707724Upstream
AEC-0002352hdaCDScomplement27078622708563Upstream
AEC-0002353uraACDScomplement27086582709947Upstream
AEC-0002354uppCDScomplement27100332710659Upstream
AEC-0002355purMCDSforward27109842712021Overlaps Upstream
AEC-0002356purNCDSforward27120212712659Matches
AEC-0002357ppkCDSforward27128312714897Downstream
AEC-0002358ppxCDSforward27149022716443Downstream
AEC-0002359yfgFCDScomplement27164822718725Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948