Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002370 (hisS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002370 showshow history
Names
hisS ECDH10B_2680
Product
histidyl tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2729088 2730362 1275 425
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004516 (IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit) Jul 2009
Automated Process Approved IPR015807 (IPR015807 Histidine-tRNA ligase) Jul 2009
Automated Process Approved IPR002314 (IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)) Jul 2009
Automated Process Approved IPR004154 (IPR004154 Anticodon-binding) Jul 2009
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006427 histidyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004821 histidine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hisS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008278
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2680 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product histidyl tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015807 Histidine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR015807
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit Protein Sequence Similarity - InterPro Domain: IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Protein Sequence Similarity - InterPro Domain: IPR002314
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004154 Anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR004154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008278 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008278
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006427 histidyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004821 histidine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000208 hisS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000256 hisS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020147 hisS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001074 hisS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003028 hisS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006746 hisS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002539 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008711 hisS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002501 hisS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006704 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006825 hisS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007972 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079180 hisS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006719 hisS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007724 hisS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002960 hisS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007232 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000855 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007082 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005602 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005077 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006588 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008578 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006239 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006371 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008229 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008028 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006709 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006627 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008154 hisS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027480 hisS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007755 hisS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007335 hisS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008278 hisS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002584 hisS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002848 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002665 hisS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133395 hisS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003703 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002843 hisS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063508 hisS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001877 hisS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000831 hisS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002708 hisS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006840 hisS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000371 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002954 hisS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007151 hisS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008132 hisS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007718 hisS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005997 hisS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007141 hisS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007025 hisS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007032 hisS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006510 hisS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006286 hisS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007078 hisS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008057 hisS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000346 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000345 hisS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000425 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007322 hisS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004861 hisS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006834 hisS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007477 hisS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110832 hisS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082046 hisS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098008 hisS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006751 hisS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007753 hisS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006125 hisS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002801 hisS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008297 hisS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004443 hisS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003104 hisS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073880 hisS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088814 hisS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002737 hisS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002833 hisS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002577 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003208 hisS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001538 hisS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002826 hisS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000348 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240964 hisS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004522 hisS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002791 hisS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006375 hisS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000712 hisS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124989 hisS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004358 hisS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006043 hisS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001706 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006407 hisS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004853 hisS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031027 hisS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007145 hisS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001522 hisS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002665 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005489 hisS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005144 hisS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002935 hisS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003526 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001509 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2724088 to 2735362
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002365xseACDSforward27240192725389Downstream
AEC-0002366yfgJCDScomplement27253862725601Downstream
AEC-0002367derCDScomplement27256712727143Downstream
AEC-0002368yfgLCDScomplement27272612728439Downstream
AEC-0002369yfgMCDScomplement27284502729070Downstream
AEC-0002370hisSCDScomplement27290882730362Matches
AEC-0002371ispGCDScomplement27304732731591Upstream
AEC-0002372yfgACDScomplement27316182732631Upstream
AEC-0002373yfgBCDScomplement27329162734070Upstream
AEC-0002374ndkCDScomplement27342202734651Upstream
AEC-0002375pbpCCDScomplement27348002737112Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948