Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002371 (ispG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002371 showshow history
Names
ispG ECDH10B_2681
Product
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2730473 2731591 1119 373
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004588 (IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type) Jul 2009
Automated Process Approved IPR016425 (IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial) Jul 2009
Automated Process Approved IPR011005 (IPR011005 Dihydropteroate synthase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0016114 terpenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004588
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011005
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ispG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008281
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2681 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type Protein Sequence Similarity - InterPro Domain: IPR004588
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial Protein Sequence Similarity - InterPro Domain: IPR016425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011005 Dihydropteroate synthase-like Protein Sequence Similarity - InterPro Domain: IPR011005
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008281 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008281
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011005
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0016114 terpenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004588
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000316 ispG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000292 ispG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020146 ispG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001073 ispG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003026 ispG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006744 ispG CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002540 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008709 ispG CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002502 ispG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006703 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006827 ispG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007970 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079181 ispG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006717 ispG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007726 ispG CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002962 ispG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007233 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000856 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007084 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005604 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005079 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006586 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008580 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006237 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006373 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008231 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008030 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006711 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006629 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008156 ispG CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027481 ispG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007753 ispG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007337 ispG CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008281 ispG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002585 ispG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002849 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002666 ispG CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133396 ispG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003704 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002844 gcpE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063509 ispG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001862 ispG CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003060 ispG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002709 ispG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006842 ispG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000369 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002955 ispG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007153 ispG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008136 gcpE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007722 gcpE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005995 ispG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007143 ispG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007027 ispG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007030 ispG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006512 ispG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006288 ispG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007080 ispG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008055 ispG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000345 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000344 ispG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000423 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007324 ispG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004859 ispG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006836 ispG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007479 ispG CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110835 ispG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082045 ispG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098011 ispG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006749 ispG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007751 ispG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006127 ispG CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002802 ispG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008299 ispG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004445 ispG CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003105 ispG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073881 ispG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088815 ispG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002738 gcpE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002834 ispG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002576 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003207 aarC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001539 ispG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002827 ispG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000347 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240965 ispG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004523 ispG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002792 ispG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006376 ispG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000713 ispG CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124992 ispG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004359 ispG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006042 ispG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000769 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006408 ispG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004852 ispG CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031026 ispG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007144 ispG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001521 ispG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002666 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005488 ispG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005143 ispG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002936 ispG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003527 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001508 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2725473 to 2736591
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002366yfgJCDScomplement27253862725601Downstream
AEC-0002367derCDScomplement27256712727143Downstream
AEC-0002368yfgLCDScomplement27272612728439Downstream
AEC-0002369yfgMCDScomplement27284502729070Downstream
AEC-0002370hisSCDScomplement27290882730362Downstream
AEC-0002371ispGCDScomplement27304732731591Matches
AEC-0002372yfgACDScomplement27316182732631Upstream
AEC-0002373yfgBCDScomplement27329162734070Upstream
AEC-0002374ndkCDScomplement27342202734651Upstream
AEC-0002375pbpCCDScomplement27348002737112Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948