Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002374 (ndk) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002374 showshow history
Names
ndk ECDH10B_2684
Product
multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2734220 2734651 432 144
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001564 (IPR001564 Nucleoside diphosphate kinase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006183 GTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006241 CTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006228 UTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004550 nucleoside diphosphate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ndk Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008291
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2684 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001564 Nucleoside diphosphate kinase Protein Sequence Similarity - InterPro Domain: IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008291 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008291
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006228 UTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006241 CTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006183 GTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004550 nucleoside diphosphate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000557 ndk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000617 ndk CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020141 ndk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001069 ndk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003023 ndk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006741 ndk CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002543 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008706 ndk CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002505 ndk CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006700 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006830 ndk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007967 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079185 ndk CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006714 ndk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007729 ndk CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002965 ndk CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007236 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000859 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007087 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005607 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005082 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006583 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008583 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006234 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006376 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008234 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008033 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006714 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006632 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008159 ndk CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027484 ndk CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007750 ndk CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007340 ndk CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008291 ndk CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002588 ndk CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002852 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002669 ndk CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133399 ndk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003707 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002848 ndk CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063513 ndk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001865 ndk CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000832 ndk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002713 ndk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006845 ndk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000366 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002958 ndk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007157 ndk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008143 ndk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007729 ndk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005992 ndk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007146 ndk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007030 ndk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007027 ndk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006515 ndk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006291 ndk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007083 ndk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008051 ndk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000342 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000341 ndk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000419 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007327 ndk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004856 ndk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006839 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007482 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110840 ndk CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082042 ndk CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098018 ndk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006746 ndk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007748 ndk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006130 ndk CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002805 ndk CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008302 ndk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004448 ndk CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003108 ndk CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073884 ndk CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088818 ndk CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002741 ndk CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002837 ndk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002572 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003191 ndk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001543 ndk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002831 ndk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000343 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240972 ndk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004527 ndk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002797 ndk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006380 ndk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000717 ndk CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125003 ndk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004363 ndk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006038 ndk CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001798 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006412 ndk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004848 ndk CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031022 ndk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007140 ndk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001516 ndk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002671 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005484 ndk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005139 ndk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002940 ndk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003532 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001503 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2729220 to 2739651
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002370hisSCDScomplement27290882730362Downstream
AEC-0002371ispGCDScomplement27304732731591Downstream
AEC-0002372yfgACDScomplement27316182732631Downstream
AEC-0002373yfgBCDScomplement27329162734070Downstream
AEC-0002374ndkCDScomplement27342202734651Matches
AEC-0002375pbpCCDScomplement27348002737112Upstream
AEC-0002376yfhMCDScomplement27371132742074Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948