Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002375 (pbpC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002375 showshow history
Names
pbpC ECDH10B_2685
Product
fused transglycosylase; transpeptidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2734800 2737112 2313 771
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011815 (IPR011815 Penicillin-binding protein 1C) Jul 2009
Automated Process Approved IPR001264 (IPR001264 Glycosyl transferase, family 51) Jul 2009
Automated Process Approved IPR001460 (IPR001460 Penicillin-binding protein, transpeptidase) Jul 2009
Automated Process Approved IPR009647 (IPR009647 Penicillin-binding, C-terminal) Jul 2009
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pbpC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008294
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_2685 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product fused transglycosylase; transpeptidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR011815 Penicillin-binding protein 1C Protein Sequence Similarity - InterPro Domain: IPR011815
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR001264 Glycosyl transferase, family 51 Protein Sequence Similarity - InterPro Domain: IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR009647 Penicillin-binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009647
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR001460 Penicillin-binding protein, transpeptidase Protein Sequence Similarity - InterPro Domain: IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008294 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008294
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002158 pbpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002141 pbpC CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003022 pbpC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006740 pbpC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002544 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008705 pbpC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002506 pbpC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006698 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006831 pbpC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007966 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079186 pbpC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006713 pbpC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007730 pbpC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002966 pbpC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007237 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000864 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007092 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005612 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005087 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006578 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008588 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006229 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006381 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008239 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008038 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006719 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006637 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008164 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027490 pbpC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007749 pbpC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007341 pbpC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008294 pbpC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002589 pbpC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002853 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002670 pbpC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133404 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003712 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002849 pbpC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006850 pbpC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000360 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007162 pbpC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008167 pbpC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007751 pbpC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005987 pbpC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007151 pbpC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007035 pbpC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007022 pbpC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006520 pbpC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006296 pbpC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007088 pbpC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008046 pbpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000337 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000336 pbpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000413 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007332 pbpC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004851 pbpC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006844 pbpC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007487 pbpC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110864 pbpC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082037 pbpC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098028 pbpC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006741 pbpC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007743 pbpC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006135 pbpC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002806 pbpC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008303 pbpC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004449 pbpC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088819 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002742 pbpC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002838 pbpC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002570 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003182 pbpC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001545 pbpC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002833 pbpC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000341 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2729800 to 2742112
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002370hisSCDScomplement27290882730362Downstream
AEC-0002371ispGCDScomplement27304732731591Downstream
AEC-0002372yfgACDScomplement27316182732631Downstream
AEC-0002373yfgBCDScomplement27329162734070Downstream
AEC-0002374ndkCDScomplement27342202734651Downstream
AEC-0002375pbpCCDScomplement27348002737112Matches
AEC-0002376yfhMCDScomplement27371132742074Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948