Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002386 (iscS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002386 showshow history
Names
iscS ECDH10B_2697
Product
cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2750104 2751318 1215 405
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000192 (IPR000192 Aminotransferase class V domain) Jul 2009
Automated Process Approved IPR010240 (IPR010240 Cysteine desulfurase IscS) Jul 2009
Automated Process Approved IPR016454 (IPR016454 Cysteine desulfurase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006534 cysteine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031071 cysteine desulfurase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name iscS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008324
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2697 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000192 Aminotransferase class V domain Protein Sequence Similarity - InterPro Domain: IPR000192
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010240 Cysteine desulfurase IscS Protein Sequence Similarity - InterPro Domain: IPR010240
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016454 Cysteine desulfurase Protein Sequence Similarity - InterPro Domain: IPR016454
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008324 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008324
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006534 cysteine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031071 cysteine desulfurase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000194 iscS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000173 iscS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046692 iscS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001065 iscS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003010 iscS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006725 iscS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002555 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008690 iscS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002516 iscS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006686 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006845 iscS CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079200 iscS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006700 iscS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007745 iscS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002978 iscS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007249 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000876 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007105 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005625 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005100 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006565 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008601 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006216 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006394 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008252 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008051 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006732 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006650 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008177 iscS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027501 iscS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007736 iscS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007354 iscS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008324 iscS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002601 iscS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002864 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002682 iscS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133415 iscS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003724 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002860 iscS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063526 iscS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001873 iscS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002005 iscS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002724 iscS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006865 iscS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000347 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002976 iscS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007178 iscS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008207 nifS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007791 nifS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005972 iscS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007167 iscS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007051 iscS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007006 iscS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006534 iscS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006310 iscS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007104 iscS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008031 iscS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000325 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000323 iscS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000396 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007347 iscS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004835 iscS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006857 iscS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007500 iscS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110902 iscS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082025 iscS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098063 iscS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006726 iscS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007727 iscS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006876 iscS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002817 iscS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008315 iscS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004464 iscS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003120 iscS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073898 iscS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088830 iscS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002755 yfhO CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002849 iscS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001163 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003158 iscS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001556 iscS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003495 iscS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000329 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240466 iscS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004540 iscS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002814 iscS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006410 iscS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000729 iscS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125032 iscS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004379 iscS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008633 iscS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004168 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006428 iscS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004833 iscS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031007 iscS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007124 iscS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001499 iscS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002687 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005472 iscS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005125 iscS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002954 iscS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003548 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001488 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2745104 to 2756318
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002379pepBCDScomplement27448622746145Downstream
AEC-0002380yfhJCDScomplement27463232746523Downstream
AEC-0002381fdxCDScomplement27465352746870Downstream
AEC-0002382hscACDScomplement27468722748722Downstream
AEC-0002383hscBCDScomplement27487392749254Downstream
AEC-0002384iscACDScomplement27493502749673Downstream
AEC-0002385iscUCDScomplement27496902750076Downstream
AEC-0002386iscSCDScomplement27501042751318Matches
AEC-0002387iscRCDScomplement27514302751918Upstream
AEC-0002388yfhQCDScomplement27523702753110Upstream
AEC-0002389suhBCDSforward27532292754032Upstream
AEC-0002390yfhRCDSforward27541772755031Upstream
AEC-0002391csiECDSforward27552222756502Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948