Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002396 (hcaC) - Escherichia coli K-12 DH10B - Feature Annotation

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Seq Similarity
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ASAP ID
AEC-0002396 showshow history
Names
hcaC ECDH10B_2707
Product
3-phenylpropionate dioxygenase, predicted ferredoxin subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2760695 2761015 321 107
Sequence

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Context

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Protein Domains to toptop
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Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hcaC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008359
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2707 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-phenylpropionate dioxygenase, predicted ferredoxin subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008359 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008359
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003355 hcaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003242 hcaC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006714 hcaC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008679 hcaC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006676 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006855 hcaC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009804 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006690 hcaC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007755 hcaC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007259 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000886 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007115 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005635 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005110 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006555 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008611 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006206 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006404 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009686 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008061 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006742 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006660 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008187 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027511 hcaC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007365 hcaC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008359 hcaC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002611 hcaC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002875 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002692 hcaC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133425 hcaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003734 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002827 hcaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004475 hcaC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073909 hcaC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088840 hcaC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002765 hcaC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002859 hcaC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003087 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009899 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001697 andAb CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003852 bphA3 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002240 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242807 hcaA12 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007472 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000419 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006719 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002422 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118350 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006711 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004916 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004176 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006576 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007993 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033081 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007876 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003762 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000693 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006249 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004788 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003308 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003979 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2755695 to 2766015
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002391csiECDSforward27552222756502Upstream
AEC-0002392hcaTCDScomplement27564942757633Upstream
AEC-0002393hcaRCDScomplement27577932758683Upstream
AEC-0002394hcaECDSforward27588192760180Upstream
AEC-0002395hcaFCDSforward27601772760695Overlaps Upstream
AEC-0002396hcaCCDSforward27606952761015Matches
AEC-0002397hcaBCDSforward27610122761824Overlaps Downstream
AEC-0002398hcaDCDSforward27618342763036Downstream
AEC-0002399yphACDSforward27630612763555Downstream
AEC-0002400yphBCDScomplement27636032764475Downstream
AEC-0002401yphCCDScomplement27644872765548Downstream
AEC-0002402yphDCDScomplement27656142766612Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948