Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002397 (hcaB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002397 showshow history
Names
hcaB ECDH10B_2708
Product
2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2761012 2761824 813 271
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR002347 (IPR002347 Short-chain dehydrogenase/reductase SDR) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hcaB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008361
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2708 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002347 Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008361 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008361
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004277 hcaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004846 hcaB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006713 hcaB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008678 hcaB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006675 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006856 hcaB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006689 hcaB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007756 hcaB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007260 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000887 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007116 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005636 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005111 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006554 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008612 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006205 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006405 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009685 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008062 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006743 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006661 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008188 hcaB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027512 hcaB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007366 hcaB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008361 hcaB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002612 hcaB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002876 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002693 hcaB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133426 hcaB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003735 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002828 hcaB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004476 hcaB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073910 hcaB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088841 hcaB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002766 hcaB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002860 hcaB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2756012 to 2766824
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002391csiECDSforward27552222756502Upstream
AEC-0002392hcaTCDScomplement27564942757633Upstream
AEC-0002393hcaRCDScomplement27577932758683Upstream
AEC-0002394hcaECDSforward27588192760180Upstream
AEC-0002395hcaFCDSforward27601772760695Upstream
AEC-0002396hcaCCDSforward27606952761015Overlaps Upstream
AEC-0002397hcaBCDSforward27610122761824Matches
AEC-0002398hcaDCDSforward27618342763036Downstream
AEC-0002399yphACDSforward27630612763555Downstream
AEC-0002400yphBCDScomplement27636032764475Downstream
AEC-0002401yphCCDScomplement27644872765548Downstream
AEC-0002402yphDCDScomplement27656142766612Downstream
AEC-0002403yphECDScomplement27666372768148Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948