Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002414 (yfhD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002414 showshow history
Names
yfhD ECDH10B_2726
Product
predicted transglycosylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2785588 2787144 1557 519

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Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000189 (IPR000189 Prokaryotic transglycosylase, active site) Jul 2009
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Jul 2009
Automated Process Approved IPR008258 (IPR008258 Transglycosylase SLT domain 1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfhD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008417
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2726 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transglycosylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000189 Prokaryotic transglycosylase, active site Protein Sequence Similarity - InterPro Domain: IPR000189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008258 Transglycosylase SLT domain 1 Protein Sequence Similarity - InterPro Domain: IPR008258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008417 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008417
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Uncurated comment The coordinates of this feature have been changed to correspond to the start site predicted in Escherichia coli K-12 W3110 (ASAP:ADY-0002630), adding 46 codons to the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu Mar 2008
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001209 mltF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001276 mltF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019662 mltF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001051 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002982 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006694 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002580 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008657 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002538 yfhD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006653 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006878 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008315 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079224 mltF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006668 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007777 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003001 yfhD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007277 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000905 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007136 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005656 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005131 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006534 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008632 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006185 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006425 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009664 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008082 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006763 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006681 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008212 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027530 yfhD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007709 mltF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007386 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008417 mltF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002630 yfhD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002894 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002710 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133443 yfhD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003754 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002886 yfhD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063548 yfhD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001829 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000838 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003311 yfhD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006896 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000319 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003004 yfhD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007206 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008303 yfhD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007878 yfhD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005943 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007195 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007079 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006980 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006559 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006336 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007132 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008004 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000300 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000298 yfhD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000365 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007374 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004808 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006884 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007527 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110981 yfhD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082002 yfhD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098144 yfhD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006699 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007698 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006905 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002851 yfhD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008335 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004499 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003144 yfhD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073930 yfhD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088856 yfhD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002783 yfhD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002879 yfhD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001185 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003083 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001579 mltF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001719 yfhD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000307 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240414 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007744 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002843 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006420 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000751 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125111 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004389 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008611 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003697 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008578 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004804 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030979 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007100 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001470 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002716 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005451 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005102 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002976 yfhD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003577 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001459 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2780588 to 2792144
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002412yfhKCDScomplement27794582780885Upstream
AEC-0004267sroFncRNAcomplement27809442781127Upstream
AEC-0002413purLCDScomplement27814432785330Upstream
AEC-0002414yfhDCDSforward27855882787144Matches
AEC-0002415tadACDScomplement27871412787644Overlaps Downstream
AEC-0002416yfhBCDScomplement27877022788337Downstream
AEC-0002417yfhHCDSforward27885462789394Downstream
AEC-0002418yfhLCDSforward27894502789710Downstream
AEC-0002419pdxJCDScomplement27907852791516Downstream
AEC-0002420recOCDScomplement27915282792256Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948