Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002429 (nadB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002429 showshow history
Names
nadB ECDH10B_2742
Product
quinolinate synthase, L-aspartate oxidase (B protein) subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2800207 2801829 1623 541
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015939 (IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal) Jul 2009
Automated Process Approved IPR003953 (IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain) Jul 2009
Automated Process Approved IPR004112 (IPR004112 (DEPRECATED) Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal) Jul 2009
Automated Process Approved IPR005288 (IPR005288 L-aspartate oxidase) Jul 2009
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009435 NAD biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008734 L-aspartate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015939
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nadB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008471
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2742 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product quinolinate synthase, L-aspartate oxidase (B protein) subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015939
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Protein Sequence Similarity - InterPro Domain: IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005288 L-aspartate oxidase Protein Sequence Similarity - InterPro Domain: IPR005288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004112 (DEPRECATED) Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004112
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008471 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008471
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009435 NAD biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008734 L-aspartate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015939
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001876 nadB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001790 nadB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020350 nadB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001028 nadB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002965 nadB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006676 nadB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002596 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008564 nadB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002553 nadB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006635 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008974 nadB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008298 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079241 nadB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006651 nadB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007794 nadB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003019 nadB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007295 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000923 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007154 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005673 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005148 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006517 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008650 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006168 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006442 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009648 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008099 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010593 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009399 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010635 nadB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027548 nadB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009263 nadB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007405 nadB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008471 nadB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002646 nadB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002910 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002726 nadB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133459 nadB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003772 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002904 nadB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063574 nadB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001919 nadB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000842 nadB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003339 nadB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006918 nadB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000292 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003096 nadB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007229 nadB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008381 nadB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007952 nadB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005921 nadB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007218 nadB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008665 nadB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006937 nadB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006581 nadB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006358 nadB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007214 nadB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009250 nadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000279 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000277 nadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000341 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007397 nadB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008709 nadB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006908 nadB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007551 nadB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111038 nadB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081981 nadB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098349 nadB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006676 nadB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009301 nadB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008896 nadB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003223 nadB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001205 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003011 nadB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001599 nadB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001738 nadB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000287 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240380 nadB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007725 nadB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002940 nadB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006439 nadB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000772 nadB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124378 nadB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004426 nadB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005407 nadB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002446 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006239 nadB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004785 nadB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030959 nadB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007287 nadB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001450 nadB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001864 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005260 nadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005084 nadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002994 nadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003596 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001384 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2795207 to 2806829
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002424lepACDScomplement27951122796911Upstream
AEC-0002425rseCCDScomplement27971092797588Upstream
AEC-0002426rseBCDScomplement27975852798541Upstream
AEC-0002427rseACDScomplement27985412799191Upstream
AEC-0002428rpoECDScomplement27992242799799Upstream
AEC-0002429nadBCDSforward28002072801829Matches
AEC-0002430yfiCCDScomplement28018142802551Overlaps Downstream
AEC-0002431srmBCDSforward28026832804017Downstream
AEC-0002432yfiECDScomplement28042262805107Downstream
AEC-0002433yfiKCDSforward28052102805797Downstream
AEC-0002434yfiDCDScomplement28058532806236Downstream
AEC-0002435ungCDSforward28065412807230Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948