Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002433 (yfiK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002433 showshow history
Names
yfiK ECDH10B_2746
Product
neutral amino-acid efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2805210 2805797 588 196
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001123 (IPR001123 Amino acid exporter protein, LeuE-type) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfiK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008487
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2746 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product neutral amino-acid efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001123 Amino acid exporter protein, LeuE-type Protein Sequence Similarity - InterPro Domain: IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008487 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008487
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001742 eamB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002027 eamB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002959 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006672 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002600 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008560 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002557 yfiK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006631 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008988 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008294 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079245 eamB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006646 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007799 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007299 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000927 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007158 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005677 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005152 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006513 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008654 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006164 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006446 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009644 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008103 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010589 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009405 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010639 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027552 yfiK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009259 eamB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007410 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008487 eamB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002650 yfiK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002915 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002730 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133463 yfiK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003776 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002908 yfiK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006922 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003100 yfiK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007234 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008396 yfiK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007967 yfiK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005916 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007222 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008661 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006932 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006586 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006363 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007219 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009255 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000275 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000273 yfiK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000336 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007401 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008703 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006913 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007556 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111051 yfiK CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081977 yfiK CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098361 yfiK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006672 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009296 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008900 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002877 yfiK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008371 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004533 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073967 yfiK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088890 yfiK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002821 yfiK CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002957 yfiK CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2800210 to 2810797
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002429nadBCDSforward28002072801829Upstream
AEC-0002430yfiCCDScomplement28018142802551Upstream
AEC-0002431srmBCDSforward28026832804017Upstream
AEC-0002432yfiECDScomplement28042262805107Upstream
AEC-0002433yfiKCDSforward28052102805797Matches
AEC-0002434yfiDCDScomplement28058532806236Downstream
AEC-0002435ungCDSforward28065412807230Downstream
AEC-0002436yfiFCDScomplement28072782808315Downstream
AEC-0002437trxCCDSforward28085222808941Downstream
AEC-0002438yfiPCDSforward28090102809708Downstream
AEC-0002439yfiQCDSforward28097402812400Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948