Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002434 (yfiD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002434 showshow history
Names
yfiD ECDH10B_2747
Product
pyruvate formate lyase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2805853 2806236 384 128
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001150 (IPR001150 Glycine radical domain) Jul 2009
Automated Process Approved IPR011140 (IPR011140 Autonomous glycyl radical cofactor GrcA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfiD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008489
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2747 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product pyruvate formate lyase subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001150 Glycine radical domain Protein Sequence Similarity - InterPro Domain: IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011140 Autonomous glycyl radical cofactor GrcA Protein Sequence Similarity - InterPro Domain: IPR011140
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008489 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008489
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001692 yfiD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001638 grcA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020347 grcA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001025 grcA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002958 grcA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006671 grcA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002601 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008559 grcA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002558 yfiD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006630 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008989 grcA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008293 GrcA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079246 yfiD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006645 grcA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007800 grcA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003024 yfiD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007300 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000928 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007159 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005678 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005153 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008655 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006163 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006447 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009643 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008104 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010588 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009406 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010640 grcA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027553 yfiD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009258 grcA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007411 grcA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008489 grcA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002651 yfiD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002916 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002731 grcA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133464 yfiD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003777 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002909 yfiD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063577 yfiD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001883 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002032 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003342 yfiD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006923 grcA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000289 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003101 yfiD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007235 grcA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008399 yfiD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007970 yfiD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005915 grcA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007223 grcA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008660 grcA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006931 grcA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006587 grcA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006364 grcA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007220 grcA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009256 grcA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000274 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000272 yfiD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000335 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007402 grcA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008702 grcA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006914 grcA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007557 grcA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111052 yfiD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081976 yfiD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098363 yfiD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006671 grcA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009295 grcA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008901 grcA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002878 yfiD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008370 grcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004534 grcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003231 yfiD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073968 yfiD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088891 yfiD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002822 yfiD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002958 yfiD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001208 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002993 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001604 grcA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001743 yfiD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000284 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240373 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007718 grcA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002933 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006446 grcA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000776 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124363 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004433 grcA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005401 grcA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006232 grcA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004778 grcA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030952 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007280 grcA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001445 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001869 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005267 grcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005078 grcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002999 yfiD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003603 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001377 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2800853 to 2811236
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002429nadBCDSforward28002072801829Downstream
AEC-0002430yfiCCDScomplement28018142802551Downstream
AEC-0002431srmBCDSforward28026832804017Downstream
AEC-0002432yfiECDScomplement28042262805107Downstream
AEC-0002433yfiKCDSforward28052102805797Downstream
AEC-0002434yfiDCDScomplement28058532806236Matches
AEC-0002435ungCDSforward28065412807230Upstream
AEC-0002436yfiFCDScomplement28072782808315Upstream
AEC-0002437trxCCDSforward28085222808941Upstream
AEC-0002438yfiPCDSforward28090102809708Upstream
AEC-0002439yfiQCDSforward28097402812400Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948