Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002437 (trxC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002437 showshow history
Names
trxC ECDH10B_2750
Product
thioredoxin 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2808522 2808941 420 140
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Jul 2009
Automated Process Approved IPR013766 (IPR013766 Thioredoxin domain) Jul 2009
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Jul 2009
Automated Process Approved IPR005746 (IPR005746 Thioredoxin) Jul 2009
Automated Process Approved IPR015467 (IPR015467 (DEPRECATED) Thioredoxin, core) Jul 2009
Automated Process Approved IPR006662 (IPR006662 (DEPRECATED) Thioredoxin-like subdomain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006662 glycerol ether metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trxC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008501
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2750 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product thioredoxin 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005746 Thioredoxin Protein Sequence Similarity - InterPro Domain: IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015467 (DEPRECATED) Thioredoxin, core Protein Sequence Similarity - InterPro Domain: IPR015467
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006662 (DEPRECATED) Thioredoxin-like subdomain Protein Sequence Similarity - InterPro Domain: IPR006662
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013766 Thioredoxin domain Protein Sequence Similarity - InterPro Domain: IPR013766
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008501 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008501
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006662 glycerol ether metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001371 trxC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001854 trxC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015967 trxC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000971 trxC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002944 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006668 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002604 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008556 trx CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002562 trxC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006627 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008992 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008290 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079250 trxC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006642 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007803 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003027 trxC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007303 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000932 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007162 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005681 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005156 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010195 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008658 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006160 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006450 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009640 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008107 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010585 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009409 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010643 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027557 trxC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009255 trxC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007414 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008501 trxC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002654 trxC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002919 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002734 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133467 trxC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003781 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002913 trxC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063825 trxC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001971 trxC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002081 trxC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004530 trxC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006926 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000286 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003104 trxC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007238 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008408 trxC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007979 trxC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006690 trxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007226 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008657 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006928 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006590 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006367 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007223 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009259 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000270 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000268 trxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000332 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007405 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008699 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006917 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007560 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111063 trxC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081973 trxC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098373 trxC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006668 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009292 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008904 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002881 trxC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008367 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004537 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003234 trxC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073971 trxC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088894 trxC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002825 trxC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002961 trxC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002808 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009380 trxC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003790 trxC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001790 trxC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003750 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235686 trxC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007585 trxC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003311 trxC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007045 trxC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000266 trxC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126320 trxC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007377 trxC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006763 trxC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001825 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005231 trxC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004383 trxC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030570 trxC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007488 trxC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001012 trxC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003482 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005033 trxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007211 trxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000905 trxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001060 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003960 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2803522 to 2813941
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002431srmBCDSforward28026832804017Upstream
AEC-0002432yfiECDScomplement28042262805107Upstream
AEC-0002433yfiKCDSforward28052102805797Upstream
AEC-0002434yfiDCDScomplement28058532806236Upstream
AEC-0002435ungCDSforward28065412807230Upstream
AEC-0002436yfiFCDScomplement28072782808315Upstream
AEC-0002437trxCCDSforward28085222808941Matches
AEC-0002438yfiPCDSforward28090102809708Downstream
AEC-0002439yfiQCDSforward28097402812400Downstream
AEC-0002440pssACDSforward28125142813869Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948