Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002440 (pssA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002440 showshow history
Names
pssA ECDH10B_2753
Product
phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2812514 2813869 1356 452
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001736 (IPR001736 Phospholipase D/Transphosphatidylase) Jul 2009
Automated Process Approved IPR016270 (IPR016270 CDP-alcohol phosphatidyltransferase class-II family) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016270
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016780 phosphotransferase activity, for other substituted phosphate groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016270
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pssA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008510
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2753 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001736 Phospholipase D/Transphosphatidylase Protein Sequence Similarity - InterPro Domain: IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016270 CDP-alcohol phosphatidyltransferase class-II family Protein Sequence Similarity - InterPro Domain: IPR016270
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008510 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008510
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016270
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016780 phosphotransferase activity, for other substituted phosphate groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016270
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000610 pssA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000523 pssA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015964 pssA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000968 pssA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002941 pssA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006665 pssA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002607 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008553 pssA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002565 pssA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006624 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008995 pssA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008287 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079253 pssA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006639 pssA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007806 pssA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003030 pssA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007306 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000935 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007165 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005684 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005159 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010192 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008661 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006157 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006453 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010570 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008110 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007961 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009412 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010646 pssA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027560 pssA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009252 pssA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007417 pssA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008510 pssA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002657 pssA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002922 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002737 pssA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133471 pssA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003784 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002916 pss CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063828 pssA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002007 pssA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002082 pssA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004533 pssA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006929 pssA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000283 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003107 pssA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007241 pssA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008415 pssA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007986 pssA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006687 pssA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007229 pssA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008654 pssA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006925 pssA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006593 pssA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006370 pssA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007226 pssA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009262 pssA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000267 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000265 pssA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000329 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007408 pssA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008696 pssA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006920 pssA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007564 pssA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111069 pssA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081970 pssA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098380 pssA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006665 pssA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009288 pssA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008907 pssA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002884 pssA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008364 pssA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004541 pssA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003237 pssA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073974 pssA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088897 pssA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002828 pssA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002964 pssA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002804 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009388 pss CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003793 pssA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001787 pssA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003747 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235683 pssA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007588 pssA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003314 pssA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007048 pssA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004275 pssA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126326 pssA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007374 pssA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006760 pssA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001828 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005234 pssA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004380 pssA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030567 pssA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007485 pssA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001009 pssA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003485 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005030 pssA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007214 pssA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000902 pssA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001057 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003963 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2807514 to 2818869
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002436yfiFCDScomplement28072782808315Upstream
AEC-0002437trxCCDSforward28085222808941Upstream
AEC-0002438yfiPCDSforward28090102809708Upstream
AEC-0002439yfiQCDSforward28097402812400Upstream
AEC-0002440pssACDSforward28125142813869Matches
AEC-0002441yfiMCDSforward28139662814238Downstream
AEC-0002442kgtPCDScomplement28142352815533Downstream
AEC-0004553pseudogeneforward28157152815774Downstream
AEC-0004221rrfGrRNAcomplement28158562815975Downstream
AEC-0004222rrlGrRNAcomplement28160682818971Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948