Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002445 (rluD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002445 showshow history
Names
rluD ECDH10B_2762
Product
23S rRNA pseudouridine synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2824818 2825798 981 327
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006224 (IPR006224 Pseudouridine synthase, RluC/RluD, conserved site) Jul 2009
Automated Process Approved IPR002942 (IPR002942 RNA-binding S4 domain) Jul 2009
Automated Process Approved IPR006145 (IPR006145 Pseudouridine synthase, RsuA/RluA-like) Jul 2009
Automated Process Approved IPR006225 (IPR006225 Pseudouridine synthase, RluC/RluD) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0001522 pseudouridine synthesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006224
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009982 pseudouridine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006224
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006224
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rluD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008532
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2762 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 23S rRNA pseudouridine synthase Experimental - PubMed ID: 11453071
Reference: Escherichia coli 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002942 RNA-binding S4 domain Protein Sequence Similarity - InterPro Domain: IPR002942
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006224 Pseudouridine synthase, RluC/RluD, conserved site Protein Sequence Similarity - InterPro Domain: IPR006224
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006145 Pseudouridine synthase, RsuA/RluA-like Protein Sequence Similarity - InterPro Domain: IPR006145
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006225 Pseudouridine synthase, RluC/RluD Protein Sequence Similarity - InterPro Domain: IPR006225
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008532 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008532
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0001522 pseudouridine synthesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006224
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006224
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009982 pseudouridine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006224
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000153 rluD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000172 rluD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016998 rluD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002735 rluD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002931 rluD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008689 rluD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002621 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008544 rluD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002576 rluD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006614 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010033 rluD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009580 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079263 rluD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010531 rluD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007816 rluD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003041 rluD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007316 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004404 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007176 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005695 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005170 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010181 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008672 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006146 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006464 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010581 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011062 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007971 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009423 rluD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009761 rluD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027569 rluD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009918 rluD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007427 rluD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008532 rluD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002666 rluD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002932 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002746 rluD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133480 rluD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005782 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002935 rluD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063648 rluD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001946 rluD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000864 rluD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004220 rluD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006941 rluD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000271 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003124 rluD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007251 rluD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008442 rluD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008008 rluD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006675 rluD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007240 rluD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008272 rluD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006914 rluD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008428 rluD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006381 rluD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007237 rluD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005783 rluD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002551 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002523 rluD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003388 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007420 rluD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008901 rluD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006932 rluD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008576 rluD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111093 rluD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084334 rluD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098400 rluD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006654 rluD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008632 rluD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006653 rluD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002897 rluD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008387 rluD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008093 rluD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003246 rluD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073985 rluD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088904 rluD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002839 sfhB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002973 rluD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003067 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002695 rluD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003998 rluD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003940 rluD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003290 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235672 rluD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007598 rluD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003324 rluD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007058 rluD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004069 rluD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126344 rluD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006542 rluD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006751 rluD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001851 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006013 rluD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004369 rluD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030558 rluD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007475 rluD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000999 rluD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003494 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005019 rluD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007223 rluD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000893 rluD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001048 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003973 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2819818 to 2830798
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004223rrsGrRNAcomplement28194032820944Downstream
AEC-0002443clpBCDScomplement28213872823960Downstream
AEC-0004552ryfDncRNAcomplement28239402824082Downstream
AEC-0002444yfiHCDScomplement28240902824821Overlaps Downstream
AEC-0002445rluDCDScomplement28248182825798Matches
AEC-0002446yfiOCDSforward28259332826670Upstream
AEC-0002447yfiACDSforward28269412827282Upstream
AEC-0002448pheLCDSforward28273862827433Upstream
AEC-0002449pheACDSforward28275322828692Upstream
AEC-0002450tyrACDScomplement28287352829856Upstream
AEC-0002451aroFCDScomplement28298672830937Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948