Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002451 (aroF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002451 showshow history
Names
aroF ECDH10B_2768
Product
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2829867 2830937 1071 357
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006218 (IPR006218 DAHP synthetase I/KDSA) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Automated Process Approved IPR006219 (IPR006219 DHAP synthase, class 1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006218
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aroF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008549
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2768 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006218 DAHP synthetase I/KDSA Protein Sequence Similarity - InterPro Domain: IPR006218
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006219 DHAP synthase, class 1 Protein Sequence Similarity - InterPro Domain: IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008549 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008549
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006218
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006219
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000520 aroF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000551 aroF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016991 aroF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002740 aroF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002926 aroF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008636 aroF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002626 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008538 aroF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002580 aroF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006608 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010028 aroF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009575 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079270 aroF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010526 aroF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007821 aroF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003049 aroF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007321 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004409 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007181 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005700 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005175 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010176 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008677 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006141 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006469 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010586 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011067 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007976 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009428 aroF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009766 aroF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027574 aroF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009923 aroF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007432 aroF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008549 aroF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002672 aroF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002937 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002751 aroF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133487 aroF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005787 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002942 aroF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063653 aroF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001958 aroF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003085 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004225 aroF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006981 aroF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000264 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003131 aroF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007257 aroF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008460 aroF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008026 aroF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006669 aroF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007246 aroF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008278 aroF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006908 aroF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008434 aroF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006387 aroF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007243 aroF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005777 aroF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002557 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002529 aroF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003396 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007426 aroF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008907 aroF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006938 aroF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008583 aroF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111112 aroF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084341 aroF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098423 aroF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006648 aroF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008592 aroF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006659 aroF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002910 aroF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008398 aroF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008087 aroF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003165 aroF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073996 aroF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088912 aroF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003063 aroF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003010 aroF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003062 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002623 aroF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003993 aroF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003730 aroF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003295 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235121 aroF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007605 aroF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003430 aroF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007067 aroF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004062 aroF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126375 aroF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006533 aroF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006022 aroF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004021 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006004 aroF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004359 aroF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030547 aroF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007466 aroF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000992 aroF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003681 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004850 aroF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007229 aroF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000888 aroF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001039 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003980 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2824867 to 2835937
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002445rluDCDScomplement28248182825798Downstream
AEC-0002446yfiOCDSforward28259332826670Downstream
AEC-0002447yfiACDSforward28269412827282Downstream
AEC-0002448pheLCDSforward28273862827433Downstream
AEC-0002449pheACDSforward28275322828692Downstream
AEC-0002450tyrACDScomplement28287352829856Downstream
AEC-0002451aroFCDScomplement28298672830937Matches
AEC-0002452yfiLCDSforward28311472831512Upstream
AEC-0002453yfiRCDSforward28316622832180Upstream
AEC-0002454yfiNCDSforward28321702833396Upstream
AEC-0002455yfiBCDSforward28334122833894Upstream
AEC-0002456rplSCDScomplement28339702834317Upstream
AEC-0002457trmDCDScomplement28343592835126Upstream
AEC-0002458rimMCDScomplement28351572835705Upstream
AEC-0002459rpsPCDScomplement28357242835972Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948