Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002512 (nrdE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002512 showshow history
Names
nrdE ECDH10B_2842
Product
ribonucleoside-diphosphate reductase 2, alpha subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2891135 2893279 2145 715
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008926 (IPR008926 Ribonucleotide reductase R1 subunit, N-terminal) Jul 2009
Automated Process Approved IPR000788 (IPR000788 Ribonucleotide reductase large subunit, C-terminal) Jul 2009
Automated Process Approved IPR013554 (IPR013554 Ribonucleotide reductase N-terminal) Jul 2009
Automated Process Approved IPR013509 (IPR013509 Ribonucleotide reductase large subunit, N-terminal) Jul 2009
Automated Process Approved IPR013346 (IPR013346 Ribonucleotide reductase, class I , alpha subunit) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrdE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008806
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2842 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribonucleoside-diphosphate reductase 2, alpha subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR008926 Ribonucleotide reductase R1 subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000788 Ribonucleotide reductase large subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000788
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013509 Ribonucleotide reductase large subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013346 Ribonucleotide reductase, class I , alpha subunit Protein Sequence Similarity - InterPro Domain: IPR013346
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013554 Ribonucleotide reductase N-terminal Protein Sequence Similarity - InterPro Domain: IPR013554
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008806 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008806
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001816 nrdE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001927 nrdE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020533 nrdE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000982 nrdE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002871 nrdE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008757 nrdE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002664 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008493 nrdE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002672 nrdE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006551 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007370 nrdE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007320 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079378 nrdE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009694 nrdE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009912 nrdE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003118 nrdE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007393 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001242 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007258 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005778 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005254 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009016 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008755 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007442 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006548 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007372 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008190 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008051 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008274 nrdE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027651 nrdE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006316 nrdE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007485 nrdE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008806 nrdE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002743 nrdE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002980 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002795 nrdE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133567 nrdE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000825 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003044 nrdE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063632 nrdE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002856 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004139 nrdE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004098 nrdE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007091 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000170 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003208 nrdE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007370 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008661 nrdE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008215 nrdE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006599 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007350 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008196 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006788 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008055 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006473 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007366 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005692 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002693 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002664 nrdE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003502 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007530 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007824 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007027 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007916 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111278 nrdE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084421 nrdE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098799 nrdE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006495 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009015 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006735 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003123 nrdE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008617 nrdE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005587 nrdE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003284 nrdE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074051 nrdE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088953 nrdE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003019 nrdE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003089 nrdE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002016 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002811 nrdE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003072 nrdE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002346 nrdE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002068 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240217 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007660 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002860 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006505 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000829 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124151 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004491 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005340 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004107 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009344 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004717 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030893 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007218 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001376 nrdE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001937 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005327 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005019 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003053 nrdE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003671 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001309 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2886135 to 2898279
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002503ygaUCDScomplement28861242886573Upstream
AEC-0002504yqaECDScomplement28866572886815Upstream
AEC-0002505ygaVCDSforward28869982887297Upstream
AEC-0002506ygaPCDSforward28873072887831Upstream
AEC-0002507stpACDScomplement28878782888282Upstream
AEC-0002508ygaWCDSforward28889512889400Upstream
AEC-0002509ygaCCDScomplement28894372889781Upstream
AEC-0002510nrdHCDSforward28905102890755Upstream
AEC-0002511nrdICDSforward28907522891162Overlaps Upstream
AEC-0002512nrdECDSforward28911352893279Matches
AEC-0002513nrdFCDSforward28932892894248Downstream
AEC-0000040IS1A.4repeat_regionforward28955982896365Downstream
AEC-0002514proWCDSforward28965742897638Downstream
AEC-0002515proXCDSforward28976962898688Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948