Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002513 (nrdF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002513 showshow history
Names
nrdF ECDH10B_2843
Product
ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2893289 2894248 960 320
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009078 (IPR009078 Ferritin-like superfamily) Jul 2009
Automated Process Approved IPR000358 (IPR000358 Ribonucleotide reductase small subunit family) Jul 2009
Automated Process Approved IPR012348 (IPR012348 Ribonucleotide reductase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009186 deoxyribonucleoside diphosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrdF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008808
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2843 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009078 Ferritin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012348 Ribonucleotide reductase-like Protein Sequence Similarity - InterPro Domain: IPR012348
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000358 Ribonucleotide reductase small subunit family Protein Sequence Similarity - InterPro Domain: IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008808 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008808
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009186 deoxyribonucleoside diphosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001785 nrdF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001755 nrdF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020532 nrdF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000981 nrdF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002870 nrdF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008756 nrdF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002665 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008492 nrdF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002673 nrdF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006550 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007371 nrdF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007321 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079379 nrdF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009693 nrdF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009911 nrdF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003119 nrdF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007394 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001243 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007259 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005779 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005255 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009017 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008756 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007441 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006549 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007373 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008191 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008052 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008275 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008226 nrdF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027652 nrdF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006317 nrdF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007486 nrdF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008808 nrdF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002744 nrdF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002981 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002796 nrdF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133568 nrdF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000826 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003045 nrdF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063633 nrdF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001932 nrdF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002047 nrdF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004099 nrdF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007092 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000169 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003209 nrdF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007371 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008666 nrdF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008220 nrdF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006598 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007351 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008197 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006787 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008056 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006474 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007367 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005691 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003503 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007531 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007823 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007028 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007917 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111283 nrdF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084422 nrdF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098802 nrdF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006494 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009014 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006736 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003122 nrdF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008616 nrdF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005586 nrdF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003285 nrdF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074052 nrdF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088954 nrdF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003018 nrdF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003090 nrdF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002015 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002808 nrdF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003073 nrdF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002345 nrdF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002067 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240215 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007659 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002859 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006506 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000830 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124148 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004492 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005339 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004106 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009343 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004716 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030892 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007217 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001375 nrdF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001938 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005328 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005018 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003054 nrdF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003672 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001308 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2888289 to 2899248
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002508ygaWCDSforward28889512889400Upstream
AEC-0002509ygaCCDScomplement28894372889781Upstream
AEC-0002510nrdHCDSforward28905102890755Upstream
AEC-0002511nrdICDSforward28907522891162Upstream
AEC-0002512nrdECDSforward28911352893279Upstream
AEC-0002513nrdFCDSforward28932892894248Matches
AEC-0000040IS1A.4repeat_regionforward28955982896365Downstream
AEC-0002514proWCDSforward28965742897638Downstream
AEC-0002515proXCDSforward28976962898688Downstream
AEC-0002516ygaY_1CDSpforward28988802899146Downstream
AEC-0004515ygaYpseudogeneforward28988802900057Downstream
AEC-0002517ygaY_2CDSpforward28991762900057Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948