Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002514 (proW) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002514 showshow history
Names
proW ECDH10B_2844
Product
glycine betaine transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2896574 2897638 1065 355
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name proW Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008816
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2844 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycine betaine transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008816 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008816
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001456 proW CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001686 proW CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015980 proW CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000978 proW CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002868 proW CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008754 proW CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002668 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008490 proW CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002675 proW CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006548 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007373 proW CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007323 ProW CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079381 proW CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009691 proW CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009909 proW CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003121 proW CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007396 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001245 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007261 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005781 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005257 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009019 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008758 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007439 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006551 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007375 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008193 proW CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008054 proW CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008277 proW CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008228 proW CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027654 proW CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006319 proW CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007488 proW CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008816 proW CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002746 proW CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002983 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002798 proW CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133570 proW CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000828 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003047 proW CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063811 proW CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001977 proW CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004172 proW CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004517 proW CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007094 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000167 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003211 proW CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007373 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008674 proW CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008228 proW CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006596 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007353 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008199 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006785 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008058 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006476 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007369 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005689 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002696 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002667 proW CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003505 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007533 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007821 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007030 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007919 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111290 proW CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084424 proW CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098810 proW CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006492 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009012 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006738 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003118 proW CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008614 proW CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005584 proW CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003290 proW CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074054 proW CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088956 proW CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003016 proW CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003092 proW CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002013 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002798 proW CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003075 proW CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002343 proW CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002065 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240207 proW CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007657 proW CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002857 proW CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006508 proW CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000832 proW CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124133 proW CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004494 proW CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005337 proW CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004104 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009341 proW CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004714 proW CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030890 proW CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007215 proW CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001373 proW CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001940 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005330 proW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005016 proW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003056 proW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003674 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001306 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2891574 to 2902638
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002512nrdECDSforward28911352893279Upstream
AEC-0002513nrdFCDSforward28932892894248Upstream
AEC-0000040IS1A.4repeat_regionforward28955982896365Upstream
AEC-0002514proWCDSforward28965742897638Matches
AEC-0002515proXCDSforward28976962898688Downstream
AEC-0002516ygaY_1CDSpforward28988802899146Downstream
AEC-0004515ygaYpseudogeneforward28988802900057Downstream
AEC-0002517ygaY_2CDSpforward28991762900057Downstream
AEC-0002518ygaZCDSforward29001812900918Downstream
AEC-0002519ygaHCDSforward29009082901243Downstream
AEC-0002520emrACDSforward29019912903163Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948