Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002515 (proX) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002515 showshow history
Names
proX ECDH10B_2845
Product
glycine betaine transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2897696 2898688 993 331
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007210 (IPR007210 ABC-type glycine betaine transport system, substrate-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name proX Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008818
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2845 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycine betaine transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Protein Sequence Similarity - InterPro Domain: IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008818 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008818
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001669 proX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001733 proX CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015979 proX CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000977 proX CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002867 proX CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008753 proX CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002669 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008489 proX CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002676 proX CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006546 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007374 proX CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007324 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079382 proX CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009690 proX CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009908 proX CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003122 proX CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007397 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001246 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007262 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005782 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005258 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009020 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008759 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007438 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006552 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007376 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008194 proX CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008055 proX CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008278 proX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008229 proX CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027655 proX CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006320 proX CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007489 proX CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008818 proX CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002747 proX CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002984 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002799 proX CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133571 proX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000829 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003048 proX CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063812 proX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001990 proX CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002076 proX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004518 proX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007095 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000166 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003212 proX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007374 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008678 proX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008232 proX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006595 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007354 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008200 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006784 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008059 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006477 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007370 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005688 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002697 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002668 proX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003506 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007534 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007820 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007031 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007920 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111294 proX CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084425 proX CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098813 proX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006491 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009011 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006739 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003117 proX CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008613 proX CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005583 proX CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074055 proX CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088957 proX CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003015 proX CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003093 proX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002012 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002796 proU CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003076 proX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002342 proX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002064 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240205 proX CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007656 proX CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002855 proX CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006509 proX CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000833 proX CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124132 proX CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004495 proX CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005336 proX CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004103 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009340 proX CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004713 proX CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030889 proX CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007214 proX CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001371 proX CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001941 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005331 proX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005015 proX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003057 proX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003675 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001304 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2892696 to 2903688
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002512nrdECDSforward28911352893279Upstream
AEC-0002513nrdFCDSforward28932892894248Upstream
AEC-0000040IS1A.4repeat_regionforward28955982896365Upstream
AEC-0002514proWCDSforward28965742897638Upstream
AEC-0002515proXCDSforward28976962898688Matches
AEC-0002516ygaY_1CDSpforward28988802899146Downstream
AEC-0004515ygaYpseudogeneforward28988802900057Downstream
AEC-0002517ygaY_2CDSpforward28991762900057Downstream
AEC-0002518ygaZCDSforward29001812900918Downstream
AEC-0002519ygaHCDSforward29009082901243Downstream
AEC-0002520emrACDSforward29019912903163Downstream
AEC-0002521emrBCDSforward29031802904718Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948