Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002518 (ygaZ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002518 showshow history
Names
ygaZ ECDH10B_2849
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2900181 2900918 738 246
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011606 (IPR011606 Branched-chain amino acid transport, permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygaZ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008829
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2849 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011606 Branched-chain amino acid transport, permease Protein Sequence Similarity - InterPro Domain: IPR011606
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008829 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008829
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002686 ygaZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002847 ygaZ CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015975 ygaZ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002865 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008750 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002671 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008486 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002678 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006543 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007377 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007327 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079385 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009687 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009905 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003124 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007402 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001249 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007265 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005785 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005261 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009023 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008762 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007435 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006555 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007379 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008197 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008058 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008281 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008232 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027657 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006323 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007492 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008829 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002750 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002987 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002802 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133573 ygaZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000832 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003051 ygaZ CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063817 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001976 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004178 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004522 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003115 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008607 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005581 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003295 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074059 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088959 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003013 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003095 ygaZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002814 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009357 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003783 ygaZ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001796 ygaZ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000770 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235711 azlC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007578 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003305 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007038 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000272 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126286 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007384 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006770 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003727 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005225 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004390 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030576 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007495 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001018 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003476 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005039 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007205 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000911 ygaZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001066 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003954 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2895181 to 2905918
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000040IS1A.4repeat_regionforward28955982896365Upstream
AEC-0002514proWCDSforward28965742897638Upstream
AEC-0002515proXCDSforward28976962898688Upstream
AEC-0002516ygaY_1CDSpforward28988802899146Upstream
AEC-0004515ygaYpseudogeneforward28988802900057Upstream
AEC-0002517ygaY_2CDSpforward28991762900057Upstream
AEC-0002518ygaZCDSforward29001812900918Matches
AEC-0002519ygaHCDSforward29009082901243Overlaps Downstream
AEC-0002520emrACDSforward29019912903163Downstream
AEC-0002521emrBCDSforward29031802904718Downstream
AEC-0002522luxSCDScomplement29047822905297Downstream
AEC-0004269sraDncRNAforward29053662905443Downstream
AEC-0002523gshACDScomplement29054472907003Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948