Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002519 (ygaH) - Escherichia coli K-12 DH10B - Feature Annotation

Overview
Context
Seq Similarity
Alignments
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Protein Domains
Gene Ontology
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Context Table
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Release Notes
ASAP ID
AEC-0002519 showshow history
Names
ygaH ECDH10B_2850
Product
predicted inner membrane protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2900908 2901243 336 112
Sequence

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Context

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Protein Domains to toptop
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Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygaH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008831
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2850 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted inner membrane protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008831 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008831
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002754 ygaH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002907 ygaH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015974 ygaH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002864 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008749 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002672 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008485 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002679 ygaH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006542 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007378 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007328 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079386 ygaH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009686 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009904 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003125 ygaH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007403 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001250 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007266 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005786 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005262 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009024 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008763 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007434 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006556 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007380 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008198 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008059 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008282 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008233 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027658 ygaH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006324 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007493 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008831 ygaH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002751 ygaH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002988 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002803 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133574 ygaH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000833 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003052 ygaH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063818 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002925 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004177 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004523 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003114 ygaH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008606 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005580 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003296 ygaH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074060 ygaH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088960 ygaH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003012 ygaH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003096 ygaH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002813 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009361 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003784 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001795 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000769 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235707 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007579 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003306 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007039 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000271 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126293 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007383 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006769 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005226 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004389 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030575 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007494 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001017 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003477 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005038 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007206 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000910 ygaH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001065 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003955 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2895908 to 2906243
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000040IS1A.4repeat_regionforward28955982896365Upstream
AEC-0002514proWCDSforward28965742897638Upstream
AEC-0002515proXCDSforward28976962898688Upstream
AEC-0002516ygaY_1CDSpforward28988802899146Upstream
AEC-0004515ygaYpseudogeneforward28988802900057Upstream
AEC-0002517ygaY_2CDSpforward28991762900057Upstream
AEC-0002518ygaZCDSforward29001812900918Overlaps Upstream
AEC-0002519ygaHCDSforward29009082901243Matches
AEC-0002520emrACDSforward29019912903163Downstream
AEC-0002521emrBCDSforward29031802904718Downstream
AEC-0002522luxSCDScomplement29047822905297Downstream
AEC-0004269sraDncRNAforward29053662905443Downstream
AEC-0002523gshACDScomplement29054472907003Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948